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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003149 through 18771 annotations produced 2 hits


paramyosin (Prm):

Annotation Number : CG5939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003149
Gbrowse : chr3L:8725957-8738447 (-) // 100.0 //
Probeset : 1628105_a_at
Accessions : protein= NP_523982; /// NP_729405; /// NP_729406; /// NP_729407;, nucleotide= NM_079258; /// NM_168290; /// NM_168291; /// NM_168292;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005863 // striated muscle myosin thick filament // non-
Interpro : 0003774 // motor activity // inferred from electronic annotation /// 0003774 // motor activity // non-traceable author s
FlyMine data for FBgn0003149.
Homophila reports that CG5939 is a close match (1e-13) to human gene DFNA17;FTNS;MHA;MYH9 (NP_002464), a gene associated with Deafness, autosomal dominant 17, 603622 (3);Epstein syndrome, 153650 (3);Fechtner syndrome, 153640 (3);Macrothrombocytopenia and progressive sensorineural deafness, 600208 (3);May-Hegglin anomaly, 155100 (3);Sebastian syndrome, 605249 (3).
BioGrid reports that CG5939 interacts with CG7357 CG8749 CG9297 CG9373 .
TRiP has 2 RNAi stocks for FBgn0003149 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 24 of 4 0.00Down
Head802 ± 174 of 4 1.00None
Eye83 ± 134 of 4 0.11Down
Thoracicoabdominal ganglion48 ± 64 of 4 0.10Down
Salivary gland9 ± 21 of 4 0.01Down
Crop3622 ± 1964 of 4 4.70Up
Midgut383 ± 244 of 4 0.50Down
Tubule38 ± 54 of 4 0.00Down
Hindgut2000 ± 514 of 4 2.60Up
Heart1346 ± 2124 of 4 1.76None
Fat body121 ± 224 of 4 0.16Down
Ovary39 ± 34 of 4 0.10Down
Testis121 ± 54 of 4 0.20Down
Male accessory glands926 ± 264 of 4 1.20Up
Virgin spermatheca76 ± 64 of 4 0.10Down
Mated spermatheca145 ± 134 of 4 0.19Down
Adult carcass2029 ± 1544 of 4 2.60Up
Larval CNS7 ± 24 of 4 0.01Down
Larval Salivary gland16 ± 24 of 4 0.02Down
Larval midgut496 ± 184 of 4 0.65Down
Larval tubule23 ± 34 of 4 0.00Down
Larval hindgut2822 ± 344 of 4 3.68Up
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea319 ± 1684 of 4 0.42Down
Larval carcass4543 ± 3574 of 4 5.92Up
S2 cells (growing)5 ± 03 of 4 0.01Down
Whole fly766 ± 284 of 4


paramyosin (Prm):

Annotation Number : CG5939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003149
Gbrowse : chr3L:8726392-8738447 (-) // 99.88 //
Probeset : 1632854_s_at
Accessions : protein= NP_523982; /// NP_729405; /// NP_729406; /// NP_729407;, nucleotide= NM_079258; /// NM_168290; /// NM_168291; /// NM_168292;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005863 // striated muscle myosin thick filament // non-
Interpro : 0003774 // motor activity // inferred from electronic annotation /// 0003774 // motor activity // non-traceable author s
FlyMine data for FBgn0003149.
Homophila reports that CG5939 is a close match (1e-13) to human gene DFNA17;FTNS;MHA;MYH9 (NP_002464), a gene associated with Deafness, autosomal dominant 17, 603622 (3);Epstein syndrome, 153650 (3);Fechtner syndrome, 153640 (3);Macrothrombocytopenia and progressive sensorineural deafness, 600208 (3);May-Hegglin anomaly, 155100 (3);Sebastian syndrome, 605249 (3).
BioGrid reports that CG5939 interacts with CG7357 CG8749 CG9297 CG9373 .
TRiP has 2 RNAi stocks for FBgn0003149 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 22 of 4 0.10Down
Head278 ± 394 of 4 0.70None
Eye39 ± 44 of 4 0.10Down
Thoracicoabdominal ganglion23 ± 42 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.02Down
Crop2876 ± 1174 of 4 7.60Up
Midgut192 ± 104 of 4 0.50Down
Tubule23 ± 21 of 4 0.10Down
Hindgut1360 ± 164 of 4 3.60Up
Heart681 ± 1094 of 4 1.79None
Fat body46 ± 64 of 4 0.12Down
Ovary31 ± 23 of 4 0.10Down
Testis106 ± 114 of 4 0.30Down
Male accessory glands567 ± 394 of 4 1.50Up
Virgin spermatheca31 ± 14 of 4 0.08Down
Mated spermatheca47 ± 34 of 4 0.12Down
Adult carcass1072 ± 1064 of 4 2.80Up
Larval CNS15 ± 11 of 4 0.04Down
Larval Salivary gland22 ± 20 of 4 0.06Down
Larval midgut206 ± 54 of 4 0.54Down
Larval tubule26 ± 22 of 4 0.10Down
Larval hindgut1937 ± 784 of 4 5.09Up
Larval fat body9 ± 20 of 4 0.00Down
Larval trachea192 ± 1054 of 4 0.51Down
Larval carcass4718 ± 3314 of 412.40Up
S2 cells (growing)20 ± 11 of 4 0.05Down
Whole fly380 ± 414 of 4

Looking for FBgn0003149. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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