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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003162 through 18771 annotations produced 1 hits



GTP cyclohydrolase (Pu):

Annotation Number : CG9441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003162
Gbrowse : chr2R:17062821-17070121 (+) // 100.0 //
Probeset : 1639469_a_at
Accessions : protein= NP_523801; /// NP_726037; /// NP_726038;, nucleotide= NM_079077; /// NM_166430; /// NM_166431;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003933 // GTP cyclohydrolase activity // infer
FlyMine data for FBgn0003162.
Homophila reports that CG9441 is a close match (6e-48) to human gene DYT5;GCH1 (NP_001019242), a gene associated with Dystonia-5, DOPA-responsive, 128230 (3);Phenylketonuria, atypical, due to GCH1 deficiency, 233910 (1).
BioGrid reports that CG9441 interacts with CG2950 CG10118 CG10118 .
VDRC has 3 RNAi stocks for FBgn0003162 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 74 of 4 0.70Down
Head853 424 of 4 5.10Up
Eye1765 1564 of 410.62Up
Thoracicoabdominal ganglion75 24 of 4 0.50Down
Salivary gland9 10 of 4 0.06Down
Crop860 264 of 4 5.20Up
Midgut14 14 of 4 0.10Down
Tubule7 11 of 4 0.00Down
Hindgut189 94 of 4 1.10None
Heart136 114 of 4 0.82None
Fat body485 814 of 4 2.92Up
Ovary16 04 of 4 0.10Down
Testis1 00 of 4 0.00Down
Male accessory glands6 31 of 4 0.00Down
Virgin spermatheca511 514 of 4 3.08Up
Mated spermatheca563 194 of 4 3.39Up
Adult carcass550 164 of 4 3.30Up
Larval CNS115 94 of 4 0.69Down
Larval Salivary gland10 13 of 4 0.06Down
Larval midgut15 14 of 4 0.09Down
Larval tubule6 12 of 4 0.00Down
Larval hindgut207 284 of 4 1.25None
Larval fat body4873 3844 of 429.30Up
Larval trachea244 344 of 4 1.47Up
Larval carcass1450 2394 of 4 8.73Up
S2 cells (growing)10 14 of 4 0.07Down
Whole fly166 124 of 4

Looking for FBgn0003162. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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