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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003175 through 18771 annotations produced 1 hits



plexus (px):

Annotation Number : CG4444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003175
Gbrowse : chr2R:18384002-18449569 (-) // 100.0 //
Probeset : 1638412_at
Accessions : protein= NP_001097417; /// NP_001097418; /// NP_726208;, nucleotide= NM_001103947; /// NM_001103948; /// NM_166535;
Pathway : 0005654 // nucleoplasm // non-traceable author statement
FlyMine data for FBgn0003175.
BioGrid reports that CG4444 interacts with CG3619 CG1007 CG1007 CG5460 CG9623 CG10079 CG3936 CG3411 CG3411 CG7892 CG1004 .
VDRC has 2 RNAi stocks for FBgn0003175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 44 of 4 0.50Down
Head93 84 of 4 0.90None
Eye49 34 of 4 0.50Down
Thoracicoabdominal ganglion57 44 of 4 0.60Down
Salivary gland179 34 of 4 1.81Up
Crop180 84 of 4 1.80Up
Midgut198 34 of 4 2.00Up
Tubule119 94 of 4 1.20Up
Hindgut239 54 of 4 2.40Up
Heart86 44 of 4 0.87None
Fat body124 84 of 4 1.25None
Ovary157 54 of 4 1.60Up
Testis29 14 of 4 0.30Down
Male accessory glands131 34 of 4 1.30Up
Virgin spermatheca140 154 of 4 1.42None
Mated spermatheca104 34 of 4 1.05None
Adult carcass116 64 of 4 1.20None
Larval CNS101 104 of 4 1.03None
Larval Salivary gland667 344 of 4 6.73Up
Larval midgut91 84 of 4 0.92None
Larval tubule299 134 of 4 3.00Up
Larval hindgut176 74 of 4 1.78Up
Larval fat body199 184 of 4 2.00Up
Larval trachea162 84 of 4 1.64Up
Larval carcass106 84 of 4 1.08None
S2 cells (growing)89 54 of 4 0.90None
Whole fly99 84 of 4

Looking for FBgn0003175. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime