Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003189 through 18771 annotations produced 1 hits



rudimentary gene (r):

Annotation Number : CG18572
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003189
Gbrowse : chrX:16549411-16563110 (+) // 100.0 //
Probeset : 1641267_at
Accessions : protein= NP_523377; /// NP_996488;, nucleotide= NM_078653; /// NM_206765;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0003189.
Homophila reports that CG18572 is a close match (5e-18) to human gene OTC (NP_000522), a gene associated with Ornithine transcarbamylase deficiency, 311250 (3).
BioGrid reports that CG18572 interacts with CG31232 CG9975 CG7811 CG7811 CG1871 CG17828 CG8573 .
VDRC has 2 RNAi stocks for FBgn0003189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 14 of 4 0.30Down
Head35 40 of 4 0.50Down
Eye19 20 of 4 0.29Down
Thoracicoabdominal ganglion36 34 of 4 0.50Down
Salivary gland29 71 of 4 0.45Down
Crop40 34 of 4 0.60None
Midgut29 23 of 4 0.40Down
Tubule11 40 of 4 0.20Down
Hindgut28 11 of 4 0.40Down
Heart20 32 of 4 0.31Down
Fat body26 30 of 4 0.40Down
Ovary112 64 of 4 1.70Up
Testis47 14 of 4 0.70None
Male accessory glands89 164 of 4 1.40None
Virgin spermatheca21 11 of 4 0.32Down
Mated spermatheca20 40 of 4 0.31Down
Adult carcass39 40 of 4 0.60None
Larval CNS111 74 of 4 1.68Up
Larval Salivary gland108 104 of 4 1.64Up
Larval midgut47 44 of 4 0.71None
Larval tubule9 20 of 4 0.10Down
Larval hindgut87 54 of 4 1.31None
Larval fat body41 11 of 4 0.60None
Larval trachea97 104 of 4 1.48Up
Larval carcass84 74 of 4 1.28None
S2 cells (growing)93 64 of 4 1.41None
Whole fly66 94 of 4

Looking for FBgn0003189. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime