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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003204 through 18771 annotations produced 1 hits



inosine monophosphate dehydrogenase (ras):

Annotation Number : CG1799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003204
Gbrowse : chrX:10638538-10642839 (+) // 100.0 //
Probeset : 1627916_s_at
Accessions : protein= NP_524646; /// NP_727441; /// NP_727442;, nucleotide= NM_079907; /// NM_167240; /// NM_167241;
Pathway : engulfment // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from mutant phenotype /// 0008152
FlyMine data for FBgn0003204.
Homophila reports that CG1799 is a close match (6e-26) to human gene (NP_006868), a gene associated with .
BioGrid reports that CG1799 interacts with CG1799 CG2199 CG3978 CG8152 .
TRiP has 2 RNAi stocks for FBgn0003204 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain465 94 of 4 0.70Down
Head529 84 of 4 0.90Down
Eye959 304 of 4 1.54Up
Thoracicoabdominal ganglion535 124 of 4 0.90Down
Salivary gland475 334 of 4 0.76Down
Crop252 174 of 4 0.40Down
Midgut386 144 of 4 0.60Down
Tubule538 234 of 4 0.90Down
Hindgut227 114 of 4 0.40Down
Heart374 104 of 4 0.60Down
Fat body789 574 of 4 1.27Up
Ovary981 64 of 4 1.60Up
Testis43 24 of 4 0.10Down
Male accessory glands724 314 of 4 1.20Up
Virgin spermatheca1054 444 of 4 1.70Up
Mated spermatheca1197 594 of 4 1.93Up
Adult carcass497 104 of 4 0.80Down
Larval CNS691 354 of 4 1.11Up
Larval Salivary gland500 264 of 4 0.81Down
Larval midgut251 154 of 4 0.41Down
Larval tubule1812 854 of 4 2.90Up
Larval hindgut526 174 of 4 0.85Down
Larval fat body2888 3104 of 4 4.60Up
Larval trachea617 624 of 4 0.99None
Larval carcass790 1564 of 4 1.27None
S2 cells (growing)355 64 of 4 0.57Down
Whole fly621 144 of 4

Looking for FBgn0003204. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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