FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003209 through 18771 annotations produced 1 hits

cyrano (raw):

Annotation Number : CG12437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003209
Gbrowse : chr2L:8709869-8740633 (-) // 100.0 //
Probeset : 1637286_a_at
Accessions : protein= NP_524789; /// NP_723416;, nucleotide= NM_080050; /// NM_164836;
Pathway : elongation of leading edge cells // traceable author statement /// 0007417 // central nervous system development // inf
FlyMine data for FBgn0003209.
BioGrid reports that CG12437 interacts with CG14671 CG5651 CG4264 CG7001 CG8280 CG3166 CG2275 CG15792 .
TRiP has 1 RNAi stocks for FBgn0003209 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003209 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	292 ± 11	4 of 4	0.90	None
Head	436 ± 31	4 of 4	1.30	Up
Eye	135 ± 5	4 of 4	0.42	Down
Thoracicoabdominal ganglion	303 ± 8	4 of 4	0.90	None
Salivary gland	172 ± 5	4 of 4	0.53	Down
Crop	934 ± 18	4 of 4	2.90	Up
Midgut	550 ± 25	4 of 4	1.70	Up
Tubule	184 ± 14	4 of 4	0.60	Down
Hindgut	541 ± 6	4 of 4	1.70	Up
Heart	439 ± 44	4 of 4	1.34	None
Fat body	597 ± 81	4 of 4	1.82	Up
Ovary	399 ± 11	4 of 4	1.20	Up
Testis	54 ± 2	4 of 4	0.20	Down
Male accessory glands	106 ± 4	4 of 4	0.30	Down
Virgin spermatheca	832 ± 74	4 of 4	2.54	Up
Mated spermatheca	894 ± 59	4 of 4	2.73	Up
Adult carcass	501 ± 16	4 of 4	1.50	Up
Larval CNS	211 ± 3	4 of 4	0.65	Down
Larval Salivary gland	108 ± 10	4 of 4	0.33	Down
Larval midgut	293 ± 22	4 of 4	0.90	None
Larval tubule	93 ± 8	4 of 4	0.30	Down
Larval hindgut	356 ± 16	4 of 4	1.09	None
Larval fat body	579 ± 34	4 of 4	1.80	Up
Larval trachea	430 ± 46	4 of 4	1.31	Up
Larval carcass	749 ± 204	4 of 4	2.29	None
S2 cells (growing)	133 ± 3	4 of 4	0.41	Down
Whole fly	327 ± 20	4 of 4

Looking for FBgn0003209. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720