FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003218 through 18771 annotations produced 2 hits

receptor-degeneration-II (rdgB):

Annotation Number : CG11111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003218
Gbrowse : chrX:13656802-13670773 (+) // 99.79 //
Probeset : 1634099_at
Accessions : protein= NP_001014740; /// NP_001014741; /// NP_001162748; /// NP_001162749; /// NP_001162750; /// NP_001162751; /// NP_511149; /// NP_727733;, nucleotide= NM_001014740; /// NM_001014741; /// NM_001169277; /// NM_001169278; /// NM_001169279; /// NM_001169280; /// NM_078594; /// NM_167382;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct a
Interpro : 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005509 // calciu
FlyMine data for FBgn0003218.
Homophila reports that CG11111 is a close match (0) to human gene CORD5;NIR1;PITPNM3 (NP_112497), a gene associated with Cone-rod dystrophy 5, 600977 (3).
BioGrid reports that CG11111 interacts with CG5962 CG4550 CG6518 CG6518 CG3620 CG3620 CG7875 .
TRiP has 1 RNAi stocks for FBgn0003218 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003218 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	756 ± 11	4 of 4	20.30	Up
Head	304 ± 44	4 of 4	8.20	Up
Eye	3469 ± 174	4 of 4	93.19	Up
Thoracicoabdominal ganglion	965 ± 66	4 of 4	25.90	Up
Salivary gland	99 ± 21	0 of 4	2.68	None
Crop	549 ± 22	4 of 4	14.70	Up
Midgut	33 ± 4	4 of 4	0.90	None
Tubule	61 ± 7	4 of 4	1.70	Up
Hindgut	139 ± 8	4 of 4	3.70	Up
Heart	129 ± 14	4 of 4	3.47	Up
Fat body	126 ± 24	4 of 4	3.39	Up
Ovary	4 ± 1	2 of 4	0.10	Down
Testis	20 ± 2	4 of 4	0.50	Down
Male accessory glands	35 ± 4	4 of 4	0.90	None
Virgin spermatheca	207 ± 19	4 of 4	5.58	Up
Mated spermatheca	267 ± 39	4 of 4	7.17	Up
Adult carcass	39 ± 5	2 of 4	1.10	None
Larval CNS	493 ± 61	4 of 4	13.25	Up
Larval Salivary gland	30 ± 1	4 of 4	0.83	None
Larval midgut	29 ± 2	4 of 4	0.78	None
Larval tubule	35 ± 7	4 of 4	1.00	None
Larval hindgut	55 ± 3	4 of 4	1.50	Up
Larval fat body	26 ± 0	4 of 4	0.70	Down
Larval trachea	113 ± 132	4 of 4	3.05	None
Larval carcass	33 ± 6	4 of 4	0.89	None
S2 cells (growing)	12 ± 1	4 of 4	0.33	Down
Whole fly	37 ± 3	4 of 4

receptor-degeneration-II (rdgB):

Annotation Number : CG11111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003218
Gbrowse : chrX:13656802-13670773 (+) // 99.79 //
Probeset : 1639574_a_at
Accessions : protein= NP_001014740; /// NP_001014741; /// NP_001162748; /// NP_001162749; /// NP_001162750; /// NP_001162751; /// NP_511149; /// NP_727733;, nucleotide= NM_001014740; /// NM_001014741; /// NM_001169277; /// NM_001169278; /// NM_001169279; /// NM_001169280; /// NM_078594; /// NM_167382;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct a
Interpro : 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005509 // calciu
FlyMine data for FBgn0003218.
Homophila reports that CG11111 is a close match (0) to human gene CORD5;NIR1;PITPNM3 (NP_112497), a gene associated with Cone-rod dystrophy 5, 600977 (3).
BioGrid reports that CG11111 interacts with CG5962 CG4550 CG6518 CG6518 CG3620 CG3620 CG7875 .
TRiP has 1 RNAi stocks for FBgn0003218 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003218 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 7	4 of 4	2.60	Up
Head	51 ± 4	4 of 4	1.10	None
Eye	384 ± 44	4 of 4	8.47	Up
Thoracicoabdominal ganglion	82 ± 6	4 of 4	1.80	Up
Salivary gland	52 ± 7	4 of 4	1.15	None
Crop	114 ± 4	4 of 4	2.50	Up
Midgut	21 ± 3	0 of 4	0.50	Down
Tubule	169 ± 20	4 of 4	3.70	Up
Hindgut	77 ± 3	4 of 4	1.70	Up
Heart	25 ± 2	4 of 4	0.56	None
Fat body	33 ± 4	4 of 4	0.73	None
Ovary	82 ± 5	4 of 4	1.80	Up
Testis	25 ± 1	4 of 4	0.60	None
Male accessory glands	22 ± 2	1 of 4	0.50	Down
Virgin spermatheca	20 ± 1	4 of 4	0.45	Down
Mated spermatheca	20 ± 4	3 of 4	0.46	Down
Adult carcass	30 ± 4	4 of 4	0.70	None
Larval CNS	58 ± 11	4 of 4	1.29	None
Larval Salivary gland	16 ± 2	2 of 4	0.37	Down
Larval midgut	24 ± 3	2 of 4	0.55	None
Larval tubule	64 ± 5	4 of 4	1.40	None
Larval hindgut	27 ± 2	4 of 4	0.60	None
Larval fat body	10 ± 4	0 of 4	0.20	Down
Larval trachea	21 ± 9	4 of 4	0.47	Down
Larval carcass	14 ± 1	4 of 4	0.32	Down
S2 cells (growing)	19 ± 2	4 of 4	0.43	Down
Whole fly	45 ± 7	4 of 4

Looking for FBgn0003218. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720