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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003248 through 18771 annotations produced 1 hits


rhodopsin (Rh2):

Annotation Number : CG16740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003248
Gbrowse : chr3R:14725142-14726741 (+) // 100.0 //
Probeset : 1633797_at
Accessions : protein= NP_524398;, nucleotide= NM_079674;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0003248.
BDGP gene expression has embryonic in situ data for Rh2: 4 pix of staining in 1 body parts.
Homophila reports that CG16740 is a close match (8e-13) to human gene RGR (NP_001012738), a gene associated with Retinitis pigmentosa, autosomal dominant (3);Retinitis pigmentosa, autosomal recessive (3).
BioGrid reports that CG16740 interacts with CG5604 CG5502 CG7977 .
VDRC has 2 RNAi stocks for FBgn0003248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2284 ± 804 of 422.70Up
Head2143 ± 694 of 421.30Up
Eye224 ± 1054 of 4 2.24None
Thoracicoabdominal ganglion8 ± 03 of 4 0.10Down
Salivary gland17 ± 33 of 4 0.17Down
Crop8 ± 12 of 4 0.10Down
Midgut9 ± 20 of 4 0.10Down
Tubule8 ± 01 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart5 ± 11 of 4 0.06Down
Fat body17 ± 34 of 4 0.17Down
Ovary6 ± 01 of 4 0.10Down
Testis7 ± 02 of 4 0.10Down
Male accessory glands14 ± 32 of 4 0.10Down
Virgin spermatheca17 ± 24 of 4 0.18Down
Mated spermatheca25 ± 74 of 4 0.26Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS10 ± 43 of 4 0.10Down
Larval Salivary gland6 ± 11 of 4 0.07Down
Larval midgut8 ± 01 of 4 0.08Down
Larval tubule9 ± 10 of 4 0.10Down
Larval hindgut5 ± 11 of 4 0.06Down
Larval fat body10 ± 31 of 4 0.10Down
Larval trachea8 ± 71 of 4 0.09Down
Larval carcass7 ± 10 of 4 0.08Down
S2 cells (growing)6 ± 03 of 4 0.06Down
Whole fly100 ± 94 of 4

Looking for FBgn0003248. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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