FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003250 through 18771 annotations produced 1 hits

rhodopsin (Rh4):

Annotation Number : CG9668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003250
Gbrowse : chr3L:16845620-16856124 (-) // 100.0 //
Probeset : 1626251_at
Accessions : protein= NP_476701;, nucleotide= NM_057353;
Pathway : UV // inferred from direct assay /// 0007604 // phototransduction
Interpro : UV // non-traceable author statement /// 0007604 // phototransduction
FlyMine data for FBgn0003250.
Homophila reports that CG9668 is a close match (2e-12) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
VDRC has 3 RNAi stocks for FBgn0003250 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 4	4 of 4	0.10	Down
Head	2290 ± 180	4 of 4	9.90	Up
Eye	7208 ± 188	4 of 4	31.15	Up
Thoracicoabdominal ganglion	12 ± 1	0 of 4	0.10	Down
Salivary gland	19 ± 5	1 of 4	0.08	Down
Crop	9 ± 2	0 of 4	0.00	Down
Midgut	6 ± 1	0 of 4	0.00	Down
Tubule	7 ± 1	0 of 4	0.00	Down
Hindgut	3 ± 1	0 of 4	0.00	Down
Heart	14 ± 4	2 of 4	0.06	Down
Fat body	16 ± 3	2 of 4	0.07	Down
Ovary	2 ± 1	0 of 4	0.00	Down
Testis	63 ± 5	4 of 4	0.30	Down
Male accessory glands	9 ± 2	0 of 4	0.00	Down
Virgin spermatheca	10 ± 2	1 of 4	0.04	Down
Mated spermatheca	7 ± 0	0 of 4	0.03	Down
Adult carcass	13 ± 3	0 of 4	0.10	Down
Larval CNS	5 ± 3	1 of 4	0.02	Down
Larval Salivary gland	11 ± 1	1 of 4	0.05	Down
Larval midgut	14 ± 1	0 of 4	0.06	Down
Larval tubule	6 ± 1	0 of 4	0.00	Down
Larval hindgut	7 ± 2	0 of 4	0.03	Down
Larval fat body	22 ± 4	1 of 4	0.10	Down
Larval trachea	174 ± 323	2 of 4	0.75	None
Larval carcass	7 ± 1	0 of 4	0.03	Down
S2 cells (growing)	11 ± 1	0 of 4	0.05	Down
Whole fly	231 ± 17	4 of 4

Looking for FBgn0003250. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720