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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003254 through 18771 annotations produced 1 hits



ribbon (rib):

Annotation Number : CG7230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003254
Gbrowse : chr2R:15163230-15168901 (+) // 100.0 //
Probeset : 1631066_at
Accessions : protein= NP_536795;, nucleotide= NM_080534;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007427 // epithelial cell migration
Interpro : open tracheal system // inferred from mutant phenotype /// 0007428 // primary branching
FlyMine data for FBgn0003254.
BDGP gene expression has embryonic in situ data for rib: 40 pix of staining in 24 body parts.
BioGrid reports that CG7230 interacts with CG15792 CG15792 .
VDRC has 2 RNAi stocks for FBgn0003254 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head11 13 of 4 0.20Down
Eye20 34 of 4 0.36Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland20 33 of 4 0.36Down
Crop20 33 of 4 0.30Down
Midgut1 00 of 4 0.00Down
Tubule7 01 of 4 0.10Down
Hindgut5 10 of 4 0.10Down
Heart2 10 of 4 0.04Down
Fat body25 94 of 4 0.44None
Ovary1 00 of 4 0.00Down
Testis48 14 of 4 0.80None
Male accessory glands8 31 of 4 0.20Down
Virgin spermatheca11 01 of 4 0.19Down
Mated spermatheca17 41 of 4 0.30Down
Adult carcass4 20 of 4 0.10Down
Larval CNS23 74 of 4 0.42None
Larval Salivary gland10 31 of 4 0.17Down
Larval midgut2 10 of 4 0.04Down
Larval tubule8 11 of 4 0.20Down
Larval hindgut6 12 of 4 0.11Down
Larval fat body18 82 of 4 0.30Down
Larval trachea3 30 of 4 0.07Down
Larval carcass5 10 of 4 0.09Down
S2 cells (growing)2 10 of 4 0.04Down
Whole fly57 114 of 4

Looking for FBgn0003254. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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