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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003255 through 18771 annotations produced 1 hits



rickets (rk):

Annotation Number : CG8930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003255
Gbrowse : chr2L:13982725-14001252 (-) // 100.0 //
Probeset : 1629172_s_at
Accessions : protein= NP_476702; /// NP_788048;, nucleotide= NM_057354; /// NM_176034;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0004930 // G-prote
FlyMine data for FBgn0003255.
BDGP gene expression has embryonic in situ data for rk: 2 pix of staining in 1 body parts.
Homophila reports that CG8930 is a close match (2e-11) to human gene KIAA1910;SLITRK1 (NP_443142), a gene associated with Tourette syndrome, 137580 (3).
TRiP has 1 RNAi stocks for FBgn0003255 available for purchase.
VDRC has 6 RNAi stocks for FBgn0003255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 24 of 4 6.00Up
Head5 10 of 4 2.60None
Eye1 00 of 4 0.57None
Thoracicoabdominal ganglion18 04 of 4 8.20Up
Salivary gland2 00 of 4 0.91None
Crop4 01 of 4 2.00None
Midgut0 00 of 4 0.40None
Tubule2 00 of 4 1.00None
Hindgut0 00 of 4 0.30None
Heart6 00 of 4 3.02Up
Fat body6 10 of 4 2.95Up
Ovary3 01 of 4 1.70None
Testis2 01 of 4 0.90None
Male accessory glands0 00 of 4 0.30None
Virgin spermatheca22 24 of 410.05Up
Mated spermatheca30 54 of 413.80Up
Adult carcass5 20 of 4 2.30None
Larval CNS7 24 of 4 3.35Up
Larval Salivary gland3 10 of 4 1.38None
Larval midgut0 00 of 4 0.36None
Larval tubule4 20 of 4 1.90None
Larval hindgut2 00 of 4 1.11None
Larval fat body104 124 of 447.30Up
Larval trachea7 12 of 4 3.27Up
Larval carcass5 12 of 4 2.61None
S2 cells (growing)2 10 of 4 1.06None
Whole fly2 00 of 4

Looking for FBgn0003255. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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