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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003256 through 18771 annotations produced 1 hits



MAP kinase (rl):

Annotation Number : CG40190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003256 /// FBgn0085732 /// FBgn0261505
Gbrowse : chrU:4660473-4660977 (+) // 93.32 // /// chr2RHet:338848-339377 (+) // 100.0 // /// chr2RHet:334551-335080 (+) // 98.75 // /// chr2RHet:239911-240439 (+) // 97.49 //
Probeset : 1629549_s_at
Accessions : protein= NP_001015121; /// NP_001015122; /// NP_001015123; /// NP_001104348; /// NP_001104349; /// NP_001104350;, nucleotide= NM_001015121; /// NM_001015122; /// NM_001015123; /// NM_001110878; /// NM_001110879; /// NM_001110880;
Pathway : DNA-dependent // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotati
Interpro : embryo // traceable author statement /// 0034334 // adherens junction maintenance // inferred from mutant phenotype ///
FlyMine data for FBgn0003256 /// FBgn0085732 /// FBgn0261505.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain531 74 of 4 1.00None
Head381 434 of 4 0.70None
Eye159 154 of 4 0.31Down
Thoracicoabdominal ganglion338 414 of 4 0.70Down
Salivary gland283 234 of 4 0.55Down
Crop361 194 of 4 0.70Down
Midgut615 204 of 4 1.20None
Tubule497 94 of 4 1.00None
Hindgut377 64 of 4 0.70None
Heart167 104 of 4 0.33Down
Fat body206 294 of 4 0.40Down
Ovary1044 334 of 4 2.00Up
Testis121 44 of 4 0.20Down
Male accessory glands775 604 of 4 1.50Up
Virgin spermatheca100 64 of 4 0.20Down
Mated spermatheca127 144 of 4 0.25Down
Adult carcass227 94 of 4 0.40Down
Larval CNS239 174 of 4 0.47Down
Larval Salivary gland245 164 of 4 0.48Down
Larval midgut148 144 of 4 0.29Down
Larval tubule699 184 of 4 1.40Up
Larval hindgut180 74 of 4 0.35Down
Larval fat body491 474 of 4 1.00None
Larval trachea209 274 of 4 0.41Down
Larval carcass137 104 of 4 0.27Down
S2 cells (growing)582 254 of 4 1.13None
Whole fly514 454 of 4

Looking for FBgn0003256. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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