FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003267 through 18771 annotations produced 1 hits

Rough (ro):

Annotation Number : CG6348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003267
Gbrowse : chr3R:22702492-22706893 (-) // 100.0 //
Probeset : 1627585_a_at
Accessions : protein= NP_524521; /// NP_733173;, nucleotide= NM_079797; /// NM_170294;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for FBgn0003267.
Homophila reports that CG6348 is a close match (5e-11) to human gene HOXD4;HOX4B (NP_055436), a gene associated with {Leukemia, acute lymphoblastic, susceptibility to} (3).
BioGrid reports that CG6348 interacts with CG3619 CG8384 CG5460 CG32120 CG7467 CG7467 CG10393 CG10393 CG7508 CG7508 CG7508 CG7508 CG7672 CG4637 CG4637 CG2411 CG2411 CG4889 .
TRiP has 1 RNAi stocks for FBgn0003267 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003267 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.80	Down
Head	1 ± 0	0 of 4	1.30	None
Eye	0 ± 0	0 of 4	0.75	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.00	None
Salivary gland	8 ± 4	0 of 4	8.00	None
Crop	2 ± 1	0 of 4	2.80	None
Midgut	1 ± 0	0 of 4	1.60	Up
Tubule	2 ± 0	0 of 4	2.10	Up
Hindgut	0 ± 0	0 of 4	0.80	None
Heart	0 ± 0	0 of 4	0.68	None
Fat body	2 ± 3	0 of 4	2.70	None
Ovary	0 ± 0	0 of 4	0.60	Down
Testis	3 ± 1	0 of 4	3.70	None
Male accessory glands	1 ± 0	0 of 4	1.40	Up
Virgin spermatheca	2 ± 0	0 of 4	2.10	None
Mated spermatheca	2 ± 0	0 of 4	2.58	None
Adult carcass	2 ± 0	0 of 4	2.40	None
Larval CNS	1 ± 1	0 of 4	1.35	None
Larval Salivary gland	1 ± 0	0 of 4	1.25	None
Larval midgut	3 ± 1	0 of 4	3.33	None
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	0 ± 0	0 of 4	0.93	None
Larval fat body	1 ± 0	0 of 4	1.40	None
Larval trachea	0 ± 0	0 of 4	0.72	None
Larval carcass	0 ± 0	0 of 4	0.95	None
S2 cells (growing)	0 ± 0	0 of 4	0.72	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0003267. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720