Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003268 through 18771 annotations produced 1 hits



rough deal (rod):

Annotation Number : CG1569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003268
Gbrowse : chr3R:27406393-27413861 (+) // 100.0 //
Probeset : 1632559_at
Accessions : protein= NP_476705;, nucleotide= NM_057357;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // non-tracea
FlyMine data for FBgn0003268.
VDRC has 1 RNAi stocks for FBgn0003268 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.20Down
Head11 14 of 4 0.10Down
Eye12 04 of 4 0.16Down
Thoracicoabdominal ganglion15 14 of 4 0.20Down
Salivary gland10 21 of 4 0.14Down
Crop11 13 of 4 0.20Down
Midgut16 14 of 4 0.20Down
Tubule9 01 of 4 0.10Down
Hindgut13 04 of 4 0.20Down
Heart11 14 of 4 0.15Down
Fat body16 24 of 4 0.21Down
Ovary196 34 of 4 2.60Up
Testis36 34 of 4 0.50Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca9 14 of 4 0.13Down
Mated spermatheca10 14 of 4 0.14Down
Adult carcass14 24 of 4 0.20Down
Larval CNS121 54 of 4 1.61Up
Larval Salivary gland9 12 of 4 0.13Down
Larval midgut13 14 of 4 0.18Down
Larval tubule15 24 of 4 0.20Down
Larval hindgut16 04 of 4 0.22Down
Larval fat body25 43 of 4 0.30Down
Larval trachea38 54 of 4 0.51Down
Larval carcass23 24 of 4 0.31Down
S2 cells (growing)212 124 of 4 2.83Up
Whole fly75 54 of 4

Looking for FBgn0003268. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime