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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003270 through 18771 annotations produced 1 hits



Rough eye (amos):

Annotation Number : CG10393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003270
Gbrowse : chr2L:18596046-18597200 (-) // 100.0 //
Probeset : 1636062_at
Accessions : protein= NP_477446;, nucleotide= NM_058098;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development //
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0003270.
BioGrid reports that CG10393 interacts with CG30417 CG3096 CG5102 CG5102 CG5102 CG3619 CG1897 CG1007 CG1007 CG8365 CG6494 CG5460 CG1689 CG6348 CG6348 CG3936 CG7508 CG7508 CG4637 CG4637 .
VDRC has 2 RNAi stocks for FBgn0003270 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.90None
Head3 10 of 4 0.80None
Eye2 10 of 4 0.66None
Thoracicoabdominal ganglion3 00 of 4 0.70None
Salivary gland16 30 of 4 3.85None
Crop5 10 of 4 1.40None
Midgut10 10 of 4 2.50Up
Tubule5 00 of 4 1.40Up
Hindgut4 10 of 4 1.10None
Heart1 00 of 4 0.33Down
Fat body6 40 of 4 1.44None
Ovary2 10 of 4 0.60None
Testis1 10 of 4 0.50None
Male accessory glands12 31 of 4 2.90None
Virgin spermatheca7 20 of 4 1.71None
Mated spermatheca4 10 of 4 1.04None
Adult carcass6 20 of 4 1.50None
Larval CNS4 20 of 4 1.10None
Larval Salivary gland3 10 of 4 0.75None
Larval midgut7 20 of 4 1.72None
Larval tubule3 00 of 4 0.90None
Larval hindgut6 20 of 4 1.58None
Larval fat body4 00 of 4 0.90None
Larval trachea2 20 of 4 0.69None
Larval carcass6 10 of 4 1.56None
S2 cells (growing)4 00 of 4 1.05None
Whole fly4 00 of 4

Looking for FBgn0003270. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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