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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003274 through 18771 annotations produced 1 hits



Temporal-protein-1 (RpLP2):

Annotation Number : CG4918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003274
Gbrowse : chr2R:12473598-12474246 (+) // 100.0 //
Probeset : 1623150_at
Accessions : protein= NP_523764; /// NP_995857;, nucleotide= NM_079040; /// NM_206135;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0003274.
BioGrid reports that CG4918 interacts with CG5009 CG6667 CG7518 CG7525 CG7763 CG9455 CG9986 .
TRiP has 1 RNAi stocks for FBgn0003274 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003274 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2887 524 of 4 0.70Down
Head4785 1224 of 4 1.10None
Eye6625 2374 of 4 1.50Up
Thoracicoabdominal ganglion4504 1054 of 4 1.00None
Salivary gland13927 4524 of 4 3.16Up
Crop6757 4374 of 4 1.50Up
Midgut5757 1864 of 4 1.30Up
Tubule5383 814 of 4 1.20Up
Hindgut5467 1294 of 4 1.20Up
Heart7908 6044 of 4 1.79Up
Fat body6125 7824 of 4 1.39Up
Ovary3720 604 of 4 0.80None
Testis1940 344 of 4 0.40Down
Male accessory glands10217 3564 of 4 2.30Up
Virgin spermatheca5723 2314 of 4 1.30Up
Mated spermatheca5671 1964 of 4 1.29Up
Adult carcass6593 3594 of 4 1.50Up
Larval CNS2936 2514 of 4 0.67Down
Larval Salivary gland8389 4054 of 4 1.90Up
Larval midgut4921 1484 of 4 1.12None
Larval tubule5455 1104 of 4 1.20Up
Larval hindgut4727 784 of 4 1.07None
Larval fat body8927 9794 of 4 2.00Up
Larval trachea6726 3184 of 4 1.52Up
Larval carcass5242 3714 of 4 1.19None
S2 cells (growing)4848 1104 of 4 1.10None
Whole fly4412 2514 of 4

Looking for FBgn0003274. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime