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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003275 through 18771 annotations produced 1 hits



chr3R:1197519-1198125 (+) // 100.0 // (RNA polymerase II):

Annotation Number : CG1163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636644_at
Accessions : protein= , nucleotide= NP_524910;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // in
FlyMine data for full length.
BioGrid reports that CG1163 interacts with CG2091 CG3069 Dmel CG4460 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 44 of 4 0.80Down
Head193 84 of 4 0.70Down
Eye182 44 of 4 0.68Down
Thoracicoabdominal ganglion166 64 of 4 0.60Down
Salivary gland226 134 of 4 0.84Down
Crop163 44 of 4 0.60Down
Midgut172 114 of 4 0.60Down
Tubule165 94 of 4 0.60Down
Hindgut138 24 of 4 0.50Down
Heart161 144 of 4 0.60Down
Fat body146 154 of 4 0.54Down
Ovary302 74 of 4 1.10Up
Testis742 64 of 4 2.80Up
Male accessory glands336 164 of 4 1.20Up
Virgin spermatheca99 124 of 4 0.37Down
Mated spermatheca141 214 of 4 0.52Down
Adult carcass134 104 of 4 0.50Down
Larval CNS565 134 of 4 2.10Up
Larval Salivary gland257 114 of 4 0.96None
Larval midgut110 84 of 4 0.41Down
Larval tubule82 04 of 4 0.30Down
Larval hindgut147 124 of 4 0.55Down
Larval fat body146 164 of 4 0.50Down
Larval trachea380 524 of 4 1.41Up
Larval carcass233 334 of 4 0.87None
S2 cells (growing)337 44 of 4 1.25Up
Whole fly269 64 of 4

Looking for FBgn0003275. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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