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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003292 through 18771 annotations produced 1 hits



Drosophila Protein O-mannosyltransferase 1 (rt):

Annotation Number : CG6097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003292
Gbrowse : chr3L:11577216-11580868 (-) // 100.0 //
Probeset : 1638012_at
Accessions : protein= NP_524025;, nucleotide= NM_079301;
Pathway : abdomen // inferred from mutant phenotype /// 0007517 // muscle organ development // inferred from mutant phenotype ///
Interpro : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
FlyMine data for FBgn0003292.
Homophila reports that CG6097 is a close match (4e-78) to human gene POMT2 (NP_037514), a gene associated with Walker-Warburg syndrome, 236670 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 0.80None
Head10 ± 10 of 4 0.30Down
Eye22 ± 24 of 4 0.55Down
Thoracicoabdominal ganglion21 ± 10 of 4 0.50Down
Salivary gland5 ± 10 of 4 0.13Down
Crop6 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.10Down
Hindgut6 ± 20 of 4 0.20Down
Heart4 ± 10 of 4 0.12Down
Fat body4 ± 30 of 4 0.10Down
Ovary187 ± 74 of 4 4.60Up
Testis6 ± 10 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.04Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass4 ± 00 of 4 0.10Down
Larval CNS17 ± 34 of 4 0.42Down
Larval Salivary gland38 ± 54 of 4 0.93None
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut28 ± 33 of 4 0.69Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea35 ± 44 of 4 0.87None
Larval carcass72 ± 84 of 4 1.75Up
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly41 ± 24 of 4

Looking for FBgn0003292. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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