FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003295 through 18771 annotations produced 1 hits

Rhomboid 3 (ru):

Annotation Number : CG1214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003295
Gbrowse : chr3L:1370619-1387435 (+) // 100.0 //
Probeset : 1632183_at
Accessions : protein= NP_524790;, nucleotide= NM_080051;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007479 // leg disc proximal/distal pattern formation // tra
Interpro : 0005886 // plasma membrane // non-traceable author statement /// 0005887 // integral to plasma membrane // inferred from
FlyMine data for FBgn0003295.
BDGP gene expression has embryonic in situ data for ru: 9 pix of staining in 4 body parts.
BioGrid reports that CG1214 interacts with CG1004 CG1004 CG1004 .
TRiP has 1 RNAi stocks for FBgn0003295 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003295 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 0	4 of 4	7.10	Up
Head	16 ± 1	4 of 4	2.50	Up
Eye	20 ± 3	4 of 4	3.14	Up
Thoracicoabdominal ganglion	55 ± 2	4 of 4	8.60	Up
Salivary gland	7 ± 5	0 of 4	1.15	None
Crop	1 ± 0	0 of 4	0.30	Down
Midgut	7 ± 0	0 of 4	1.20	None
Tubule	5 ± 0	0 of 4	0.80	Down
Hindgut	8 ± 2	0 of 4	1.30	None
Heart	2 ± 0	0 of 4	0.36	Down
Fat body	6 ± 3	1 of 4	1.02	None
Ovary	4 ± 0	0 of 4	0.70	None
Testis	4 ± 1	0 of 4	0.70	None
Male accessory glands	10 ± 2	2 of 4	1.70	None
Virgin spermatheca	4 ± 1	0 of 4	0.73	None
Mated spermatheca	6 ± 2	2 of 4	0.98	None
Adult carcass	14 ± 1	0 of 4	2.20	Up
Larval CNS	22 ± 0	4 of 4	3.54	Up
Larval Salivary gland	11 ± 1	1 of 4	1.73	None
Larval midgut	2 ± 1	0 of 4	0.43	None
Larval tubule	7 ± 1	0 of 4	1.10	None
Larval hindgut	5 ± 1	0 of 4	0.90	None
Larval fat body	7 ± 1	0 of 4	1.10	None
Larval trachea	4 ± 2	1 of 4	0.72	None
Larval carcass	9 ± 1	1 of 4	1.41	None
S2 cells (growing)	5 ± 0	0 of 4	0.85	None
Whole fly	6 ± 0	1 of 4

Looking for FBgn0003295. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720