Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003300 through 18771 annotations produced 1 hits



chrX:20565467-20568348 (+) // 99.8 // (runt):

Annotation Number : CG1849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634413_at
Accessions : protein= , nucleotide= NP_523424;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for full length.
Homophila reports that CG1849 is a close match (6e-39) to human gene AML3;CBFA1;PEBP2A1;RUNX2 (NP_004339), a gene associated with Cleidocranial dysplasia, 119600 (3);Dental anomalies, isolated (3).
BioGrid reports that CG1849 interacts with CG7959 CG7960 CG8384 CG7622 CG7960 CG7583 CG3922 CG7471 CG1856 CG18001 CG6684 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 4.80Up
Head13 14 of 4 2.10Up
Eye4 10 of 4 0.74None
Thoracicoabdominal ganglion21 14 of 4 3.50Up
Salivary gland11 10 of 4 1.83None
Crop7 13 of 4 1.30None
Midgut2 10 of 4 0.40Down
Tubule3 00 of 4 0.60Down
Hindgut35 34 of 4 5.80Up
Heart0 00 of 4 0.15Down
Fat body11 44 of 4 1.90None
Ovary0 00 of 4 0.10Down
Testis3 12 of 4 0.60None
Male accessory glands3 10 of 4 0.60None
Virgin spermatheca5 12 of 4 0.95None
Mated spermatheca9 23 of 4 1.49None
Adult carcass6 00 of 4 1.10None
Larval CNS132 74 of 421.51Up
Larval Salivary gland4 10 of 4 0.79None
Larval midgut1 00 of 4 0.24Down
Larval tubule3 11 of 4 0.60None
Larval hindgut68 34 of 411.17Up
Larval fat body3 10 of 4 0.50None
Larval trachea3 00 of 4 0.57None
Larval carcass10 04 of 4 1.65Up
S2 cells (growing)7 04 of 4 1.23None
Whole fly6 12 of 4

Looking for FBgn0003300. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime