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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003302 through 18771 annotations produced 1 hits



roughex (rux):

Annotation Number : CG4336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003302
Gbrowse : chrX:5929777-5931209 (-) // 100.0 //
Probeset : 1635811_at
Accessions : protein= NP_511053;, nucleotide= NM_078498;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0003302.
BDGP gene expression has embryonic in situ data for rux: 19 pix of staining in 8 body parts.
BioGrid reports that CG4336 interacts with CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG5940 CG3510 CG4965 CG4965 CG9375 CG3938 CG3938 CG3938 CG3938 CG10800 CG4385 CG4426 CG5363 CG5363 CG4063 CG1395 CG1395 CG1395 CG4488 CG1871 CG14119 CG7296 CG15043 CG15676 CG15861 CG2948 CG17046 CG5731 CG1034 CG3085 CG18745 CG11963 CG18332 CG5390 CG31811 CG16892 CG31646 CG8667 CG12085 CG2189 CG13625 CG8823 CG3938 CG3193 CG4496 CG2116 CG17309 CG11849 CG1106 CG10021 CG13900 CG9027 CG3539 CG14798 CG17292 CG33275 .
TRiP has 2 RNAi stocks for FBgn0003302 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 24 of 4 1.60Up
Head71 04 of 4 0.60Down
Eye58 34 of 4 0.49Down
Thoracicoabdominal ganglion128 34 of 4 1.10None
Salivary gland39 44 of 4 0.33Down
Crop46 34 of 4 0.40Down
Midgut28 12 of 4 0.20Down
Tubule31 24 of 4 0.30Down
Hindgut30 24 of 4 0.30Down
Heart22 24 of 4 0.19Down
Fat body14 34 of 4 0.13Down
Ovary180 54 of 4 1.50Up
Testis641 364 of 4 5.40Up
Male accessory glands55 44 of 4 0.50Down
Virgin spermatheca22 14 of 4 0.19Down
Mated spermatheca25 14 of 4 0.21Down
Adult carcass25 14 of 4 0.20Down
Larval CNS124 104 of 4 1.05None
Larval Salivary gland48 14 of 4 0.41Down
Larval midgut28 24 of 4 0.24Down
Larval tubule28 24 of 4 0.20Down
Larval hindgut24 14 of 4 0.21Down
Larval fat body72 343 of 4 0.60None
Larval trachea33 84 of 4 0.28Down
Larval carcass25 14 of 4 0.22Down
S2 cells (growing)34 04 of 4 0.29Down
Whole fly118 84 of 4

Looking for FBgn0003302. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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