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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003312 through 18771 annotations produced 1 hits



shadow (sad):

Annotation Number : CG14728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003312
Gbrowse : chr3R:7703062-7705372 (+) // 100.0 //
Probeset : 1626485_at
Accessions : protein= NP_650123;, nucleotide= NM_141866;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structu
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0003312.
Homophila reports that CG14728 is a close match (2e-12) to human gene CYP17;CYP17A1;P450C17 (NP_000093), a gene associated with 17,20-lyase deficiency, isolated, 202110 (3);17-alpha-hydroxylase/17,20-lyase deficiency, 202110 (3).
VDRC has 3 RNAi stocks for FBgn0003312 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head1 00 of 4 0.40None
Eye3 10 of 4 0.98None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland5 30 of 4 1.74None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.40None
Tubule2 00 of 4 0.70None
Hindgut1 00 of 4 0.30None
Heart0 00 of 4 0.27None
Fat body1 00 of 4 0.30None
Ovary3 10 of 4 1.00None
Testis3 00 of 4 1.10None
Male accessory glands2 10 of 4 0.80None
Virgin spermatheca0 00 of 4 0.26None
Mated spermatheca1 00 of 4 0.34None
Adult carcass2 10 of 4 0.90None
Larval CNS22 103 of 4 6.95Up
Larval Salivary gland1 00 of 4 0.51None
Larval midgut3 10 of 4 0.98None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.27None
Larval fat body8 41 of 4 2.50None
Larval trachea70 264 of 421.90Up
Larval carcass3 10 of 4 1.16None
S2 cells (growing)0 00 of 4 0.30None
Whole fly3 10 of 4

Looking for FBgn0003312. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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