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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003321 through 18771 annotations produced 1 hits



locus 1 (sbr):

Annotation Number : CG1664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003321
Gbrowse : chrX:10726781-10741125 (-) // 100.0 //
Probeset : 1627673_at
Accessions : protein= NP_524660;, nucleotide= NM_079921;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electro
FlyMine data for FBgn0003321.
TRiP has 2 RNAi stocks for FBgn0003321 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain550 104 of 4 2.50Up
Head204 64 of 4 0.90None
Eye264 64 of 4 1.18None
Thoracicoabdominal ganglion444 164 of 4 2.00Up
Salivary gland211 14 of 4 0.94None
Crop225 64 of 4 1.00None
Midgut197 24 of 4 0.90None
Tubule206 64 of 4 0.90Down
Hindgut185 24 of 4 0.80None
Heart197 84 of 4 0.88None
Fat body207 94 of 4 0.93None
Ovary414 134 of 4 1.90Up
Testis43 04 of 4 0.20Down
Male accessory glands229 74 of 4 1.00None
Virgin spermatheca187 64 of 4 0.84None
Mated spermatheca194 54 of 4 0.87None
Adult carcass173 14 of 4 0.80None
Larval CNS321 144 of 4 1.44Up
Larval Salivary gland224 34 of 4 1.00None
Larval midgut140 74 of 4 0.63Down
Larval tubule225 64 of 4 1.00None
Larval hindgut194 54 of 4 0.87None
Larval fat body206 104 of 4 0.90None
Larval trachea287 204 of 4 1.28Up
Larval carcass188 114 of 4 0.84None
S2 cells (growing)571 34 of 4 2.56Up
Whole fly223 184 of 4

Looking for FBgn0003321. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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