FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003326 through 18771 annotations produced 2 hits

scabrous (sca):

Annotation Number : CG17579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003326
Gbrowse : chr2R:8668048-8688595 (+) // 100.0 //
Probeset : 1633936_a_at
Accessions : protein= NP_476710; /// NP_725230;, nucleotide= NM_057362; /// NM_165951;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005577 // fibrinogen complex // inferred from seq
Interpro : 0004871 // signal transducer activity // traceable author statement /// 0005102 // receptor binding // inferred from ele
FlyMine data for FBgn0003326.
Homophila reports that CG17579 is a close match (6e-24) to human gene (NP_001034756), a gene associated with .
BioGrid reports that CG17579 interacts with CG1906 CG3619 CG8365 CG12399 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG4637 CG4637 CG7892 CG7892 .
TRiP has 1 RNAi stocks for FBgn0003326 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003326 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	31 ± 1	4 of 4	3.10	Up
Head	11 ± 1	4 of 4	1.20	None
Eye	7 ± 0	2 of 4	0.73	None
Thoracicoabdominal ganglion	15 ± 2	4 of 4	1.50	None
Salivary gland	23 ± 3	2 of 4	2.31	Up
Crop	13 ± 1	3 of 4	1.30	None
Midgut	15 ± 1	0 of 4	1.50	None
Tubule	9 ± 0	1 of 4	0.90	Down
Hindgut	14 ± 2	3 of 4	1.40	None
Heart	8 ± 1	1 of 4	0.81	None
Fat body	18 ± 8	4 of 4	1.78	None
Ovary	4 ± 0	0 of 4	0.50	None
Testis	7 ± 1	3 of 4	0.70	None
Male accessory glands	9 ± 3	1 of 4	0.90	None
Virgin spermatheca	12 ± 2	0 of 4	1.23	None
Mated spermatheca	13 ± 2	2 of 4	1.31	None
Adult carcass	16 ± 6	2 of 4	1.60	None
Larval CNS	19 ± 5	4 of 4	1.94	Up
Larval Salivary gland	14 ± 2	2 of 4	1.47	None
Larval midgut	16 ± 0	0 of 4	1.65	None
Larval tubule	12 ± 2	3 of 4	1.20	None
Larval hindgut	11 ± 1	3 of 4	1.08	None
Larval fat body	11 ± 0	2 of 4	1.10	None
Larval trachea	7 ± 2	3 of 4	0.77	None
Larval carcass	9 ± 2	2 of 4	0.89	None
S2 cells (growing)	10 ± 1	4 of 4	1.07	None
Whole fly	10 ± 2	2 of 4

scabrous (sca):

Annotation Number : CG17579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003326
Gbrowse : chr2R:8668048-8689515 (+) // 100.0 //
Probeset : 1636998_at
Accessions : protein= NP_476710; /// NP_725230;, nucleotide= NM_057362; /// NM_165951;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005577 // fibrinogen complex // inferred from seq
Interpro : 0004871 // signal transducer activity // traceable author statement /// 0005102 // receptor binding // inferred from ele
FlyMine data for FBgn0003326.
Homophila reports that CG17579 is a close match (6e-24) to human gene (NP_001034756), a gene associated with .
BioGrid reports that CG17579 interacts with CG1906 CG3619 CG8365 CG12399 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG4637 CG4637 CG7892 CG7892 .
TRiP has 1 RNAi stocks for FBgn0003326 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003326 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	199 ± 8	4 of 4	24.20	Up
Head	26 ± 3	4 of 4	3.20	Up
Eye	5 ± 1	1 of 4	0.69	None
Thoracicoabdominal ganglion	94 ± 6	4 of 4	11.40	Up
Salivary gland	7 ± 1	0 of 4	0.85	None
Crop	5 ± 2	2 of 4	0.60	None
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	1 ± 0	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.40	None
Fat body	8 ± 2	3 of 4	1.05	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	2 ± 1	1 of 4	0.30	None
Male accessory glands	6 ± 1	0 of 4	0.80	None
Virgin spermatheca	8 ± 1	2 of 4	0.99	None
Mated spermatheca	7 ± 2	3 of 4	0.86	None
Adult carcass	15 ± 2	1 of 4	1.80	None
Larval CNS	202 ± 22	4 of 4	24.49	Up
Larval Salivary gland	4 ± 0	0 of 4	0.52	None
Larval midgut	5 ± 1	1 of 4	0.61	None
Larval tubule	2 ± 0	0 of 4	0.30	None
Larval hindgut	4 ± 1	1 of 4	0.54	None
Larval fat body	5 ± 1	0 of 4	0.70	None
Larval trachea	5 ± 2	2 of 4	0.69	None
Larval carcass	10 ± 0	4 of 4	1.25	None
S2 cells (growing)	2 ± 1	1 of 4	0.36	None
Whole fly	8 ± 2	4 of 4

Looking for FBgn0003326. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720