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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003326 through 18771 annotations produced 2 hits



scabrous (sca):

Annotation Number : CG17579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003326
Gbrowse : chr2R:8668048-8689515 (+) // 100.0 //
Probeset : 1636998_at
Accessions : protein= NP_476710; /// NP_725230;, nucleotide= NM_057362; /// NM_165951;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005577 // fibrinogen complex // inferred from seq
Interpro : 0004871 // signal transducer activity // traceable author statement /// 0005102 // receptor binding // inferred from ele
FlyMine data for FBgn0003326.
Homophila reports that CG17579 is a close match (6e-24) to human gene (NP_001034756), a gene associated with .
BioGrid reports that CG17579 interacts with CG1906 CG3619 CG8365 CG12399 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG4637 CG4637 CG7892 CG7892 .
TRiP has 1 RNAi stocks for FBgn0003326 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 84 of 424.20Up
Head26 34 of 4 3.20Up
Eye5 11 of 4 0.69None
Thoracicoabdominal ganglion94 64 of 411.40Up
Salivary gland7 10 of 4 0.85None
Crop5 22 of 4 0.60None
Midgut1 00 of 4 0.20Down
Tubule3 00 of 4 0.40Down
Hindgut1 00 of 4 0.20Down
Heart3 10 of 4 0.40None
Fat body8 23 of 4 1.05None
Ovary1 00 of 4 0.20Down
Testis2 11 of 4 0.30None
Male accessory glands6 10 of 4 0.80None
Virgin spermatheca8 12 of 4 0.99None
Mated spermatheca7 23 of 4 0.86None
Adult carcass15 21 of 4 1.80None
Larval CNS202 224 of 424.49Up
Larval Salivary gland4 00 of 4 0.52None
Larval midgut5 11 of 4 0.61None
Larval tubule2 00 of 4 0.30None
Larval hindgut4 11 of 4 0.54None
Larval fat body5 10 of 4 0.70None
Larval trachea5 22 of 4 0.69None
Larval carcass10 04 of 4 1.25None
S2 cells (growing)2 11 of 4 0.36None
Whole fly8 24 of 4



scabrous (sca):

Annotation Number : CG17579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003326
Gbrowse : chr2R:8668048-8688595 (+) // 100.0 //
Probeset : 1633936_a_at
Accessions : protein= NP_476710; /// NP_725230;, nucleotide= NM_057362; /// NM_165951;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005577 // fibrinogen complex // inferred from seq
Interpro : 0004871 // signal transducer activity // traceable author statement /// 0005102 // receptor binding // inferred from ele
FlyMine data for FBgn0003326.
Homophila reports that CG17579 is a close match (6e-24) to human gene (NP_001034756), a gene associated with .
BioGrid reports that CG17579 interacts with CG1906 CG3619 CG8365 CG12399 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG4637 CG4637 CG7892 CG7892 .
TRiP has 1 RNAi stocks for FBgn0003326 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 3.10Up
Head11 14 of 4 1.20None
Eye7 02 of 4 0.73None
Thoracicoabdominal ganglion15 24 of 4 1.50None
Salivary gland23 32 of 4 2.31Up
Crop13 13 of 4 1.30None
Midgut15 10 of 4 1.50None
Tubule9 01 of 4 0.90Down
Hindgut14 23 of 4 1.40None
Heart8 11 of 4 0.81None
Fat body18 84 of 4 1.78None
Ovary4 00 of 4 0.50None
Testis7 13 of 4 0.70None
Male accessory glands9 31 of 4 0.90None
Virgin spermatheca12 20 of 4 1.23None
Mated spermatheca13 22 of 4 1.31None
Adult carcass16 62 of 4 1.60None
Larval CNS19 54 of 4 1.94Up
Larval Salivary gland14 22 of 4 1.47None
Larval midgut16 00 of 4 1.65None
Larval tubule12 23 of 4 1.20None
Larval hindgut11 13 of 4 1.08None
Larval fat body11 02 of 4 1.10None
Larval trachea7 23 of 4 0.77None
Larval carcass9 22 of 4 0.89None
S2 cells (growing)10 14 of 4 1.07None
Whole fly10 22 of 4

Looking for FBgn0003326. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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