FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003334 through 18771 annotations produced 2 hits

Frost /// Sex combs on midleg (Fst /// Scm):

Annotation Number : CG9434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037724
Gbrowse : chr3R:5470850-5471874 (-) // 100.0 //
Probeset : 1630600_at
Accessions : protein= NP_524294;, nucleotide= NM_079570;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0035102 //
Interpro : 0003704 // specific RNA polymerase II transcription factor activity // non-traceable author statement /// 0005515 // pro
FlyMine data for FBgn0037724.
TRiP has 1 RNAi stocks for FBgn0037724 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037724 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.00	None
Head	8 ± 2	0 of 4	0.10	None
Eye	2 ± 0	0 of 4	0.02	None
Thoracicoabdominal ganglion	8 ± 2	0 of 4	0.10	None
Salivary gland	6 ± 2	0 of 4	0.04	None
Crop	6 ± 2	0 of 4	0.00	None
Midgut	588 ± 45	4 of 4	4.10	Up
Tubule	1522 ± 902	4 of 4	10.50	None
Hindgut	82 ± 7	4 of 4	0.60	None
Heart	5 ± 2	0 of 4	0.04	None
Fat body	185 ± 326	1 of 4	1.28	None
Ovary	4 ± 1	0 of 4	0.00	None
Testis	4 ± 1	0 of 4	0.00	None
Male accessory glands	10 ± 2	0 of 4	0.10	None
Virgin spermatheca	16 ± 2	0 of 4	0.11	None
Mated spermatheca	13 ± 2	1 of 4	0.10	None
Adult carcass	14 ± 4	0 of 4	0.10	None
Larval CNS	5 ± 2	0 of 4	0.04	None
Larval Salivary gland	7 ± 1	0 of 4	0.05	None
Larval midgut	3217 ± 84	4 of 4	22.26	Up
Larval tubule	7118 ± 203	4 of 4	49.30	Up
Larval hindgut	2671 ± 230	4 of 4	18.49	Up
Larval fat body	37 ± 13	2 of 4	0.30	None
Larval trachea	4 ± 1	0 of 4	0.03	None
Larval carcass	10 ± 2	0 of 4	0.08	None
S2 cells (growing)	7 ± 1	0 of 4	0.05	None
Whole fly	144 ± 96	4 of 4

Sex combs on midleg (Scm):

Annotation Number : CG9495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003334
Gbrowse : chr3R:5459080-5463329 (-) // 100.0 //
Probeset : 1628248_at
Accessions : protein= NP_731385;, nucleotide= NM_169299;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003704 // specific RNA polymerase II transcription factor activity // non-traceable author statement /// 0005515 // pro
FlyMine data for FBgn0003334.
BDGP gene expression has embryonic in situ data for Scm: 6 pix of staining in 1 body parts.
BioGrid reports that CG9495 interacts with CG6502 CG32443 CG32443 CG11387 CG12058 CG12058 CG18412 CG18412 CG8573 CG8573 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG3757 CG3757 CG3757 CG3757 CG7803 CG7803 .
TRiP has 2 RNAi stocks for FBgn0003334 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003334 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	519 ± 14	4 of 4	1.60	Up
Head	291 ± 15	4 of 4	0.90	None
Eye	216 ± 19	4 of 4	0.66	Down
Thoracicoabdominal ganglion	295 ± 4	4 of 4	0.90	None
Salivary gland	325 ± 25	4 of 4	1.00	None
Crop	292 ± 11	4 of 4	0.90	None
Midgut	154 ± 5	4 of 4	0.50	Down
Tubule	174 ± 5	4 of 4	0.50	Down
Hindgut	234 ± 6	4 of 4	0.70	Down
Heart	196 ± 3	4 of 4	0.60	Down
Fat body	166 ± 8	4 of 4	0.51	Down
Ovary	910 ± 20	4 of 4	2.80	Up
Testis	51 ± 2	4 of 4	0.20	Down
Male accessory glands	262 ± 7	4 of 4	0.80	None
Virgin spermatheca	237 ± 16	4 of 4	0.73	Down
Mated spermatheca	284 ± 19	4 of 4	0.87	None
Adult carcass	189 ± 6	4 of 4	0.60	Down
Larval CNS	453 ± 65	4 of 4	1.39	Up
Larval Salivary gland	332 ± 17	4 of 4	1.02	None
Larval midgut	127 ± 3	4 of 4	0.39	Down
Larval tubule	143 ± 4	4 of 4	0.40	Down
Larval hindgut	222 ± 9	4 of 4	0.68	Down
Larval fat body	179 ± 9	4 of 4	0.60	Down
Larval trachea	287 ± 40	4 of 4	0.88	None
Larval carcass	205 ± 8	4 of 4	0.63	Down
S2 cells (growing)	260 ± 7	4 of 4	0.80	None
Whole fly	325 ± 24	4 of 4

Looking for FBgn0003334. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720