FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003339 through 18771 annotations produced 1 hits

chr3R:2648841-2674341 (-) // 100.0 // (sex-combs reduced):

Annotation Number : CG1030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633345_at
Accessions : protein= , nucleotide= NP_524248; /// NP_996164; /// NP_996165;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for full length.
Homophila reports that CG1030 is a close match (2e-12) to human gene HOXA11;HOX1I (NP_005514), a gene associated with Radioulnar synostosis with amegakaryocytic thrombocytopenia, 605432 (3).
BioGrid reports that CG1030 interacts with CG1028 CG1028 CG1028 CG1028 CG17117 CG17117 CG17117 CG1264 CG1264 CG32443 CG32443 CG5109 CG5109 CG3938 CG12223 CG12223 CG31481 CG31481 CG31481 CG31481 CG9936 CG9936 CG7958 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 3	4 of 4	3.00	Up
Head	36 ± 4	4 of 4	4.00	Up
Eye	2 ± 0	0 of 4	0.30	Down
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.50	Down
Salivary gland	32 ± 2	2 of 4	3.52	Up
Crop	3 ± 1	0 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.30	Down
Hindgut	4 ± 1	0 of 4	0.50	Down
Heart	0 ± 0	0 of 4	0.10	Down
Fat body	9 ± 2	2 of 4	1.04	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.30	Down
Male accessory glands	4 ± 2	0 of 4	0.50	None
Virgin spermatheca	5 ± 1	0 of 4	0.64	None
Mated spermatheca	5 ± 1	1 of 4	0.64	None
Adult carcass	18 ± 3	1 of 4	2.00	None
Larval CNS	52 ± 5	4 of 4	5.70	Up
Larval Salivary gland	38 ± 2	4 of 4	4.11	Up
Larval midgut	4 ± 1	0 of 4	0.46	Down
Larval tubule	3 ± 0	0 of 4	0.30	Down
Larval hindgut	2 ± 1	1 of 4	0.27	Down
Larval fat body	2 ± 2	0 of 4	0.30	Down
Larval trachea	2 ± 2	0 of 4	0.31	Down
Larval carcass	6 ± 0	2 of 4	0.71	Down
S2 cells (growing)	1 ± 0	0 of 4	0.13	Down
Whole fly	9 ± 0	4 of 4

Looking for FBgn0003339. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720