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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003346 through 18771 annotations produced 1 hits



Segregation distorter (RanGap):

Annotation Number : CG9999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003346
Gbrowse : chr2L:19442040-19447322 (+) // 100.0 //
Probeset : 1623819_at
Accessions : protein= NP_476712;, nucleotide= NM_057364;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005098 // Ran GTPase activator activity
FlyMine data for FBgn0003346.
BDGP gene expression has embryonic in situ data for Sd: 41 pix of staining in 16 body parts.
BioGrid reports that CG9999 interacts with CG10480 CG1404 .
TRiP has 1 RNAi stocks for FBgn0003346 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 04 of 4 0.20Down
Head63 24 of 4 0.20Down
Eye64 24 of 4 0.24Down
Thoracicoabdominal ganglion84 34 of 4 0.30Down
Salivary gland43 03 of 4 0.16Down
Crop78 14 of 4 0.30Down
Midgut73 74 of 4 0.30Down
Tubule60 114 of 4 0.20Down
Hindgut113 14 of 4 0.40Down
Heart58 54 of 4 0.21Down
Fat body73 134 of 4 0.27Down
Ovary560 164 of 4 2.00Up
Testis222 164 of 4 0.80Down
Male accessory glands118 64 of 4 0.40Down
Virgin spermatheca79 34 of 4 0.29Down
Mated spermatheca94 64 of 4 0.34Down
Adult carcass60 34 of 4 0.20Down
Larval CNS777 354 of 4 2.82Up
Larval Salivary gland213 134 of 4 0.77Down
Larval midgut71 14 of 4 0.26Down
Larval tubule74 44 of 4 0.30Down
Larval hindgut117 64 of 4 0.43Down
Larval fat body110 104 of 4 0.40Down
Larval trachea309 354 of 4 1.12None
Larval carcass163 94 of 4 0.59Down
S2 cells (growing)347 94 of 4 1.26Up
Whole fly276 94 of 4

Looking for FBgn0003346. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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