FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003360 through 18771 annotations produced 3 hits

lethal(1)9Ed (sesB):

Annotation Number : CG16944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003360
Gbrowse : chrX:10675018-10680978 (-) // 100.0 //
Probeset : 1630941_s_at
Accessions : protein= NP_511109; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0003360.
BDGP gene expression has embryonic in situ data for sesB: 4 pix of staining in 1 body parts.
Homophila reports that CG16944 is a close match (7e-11) to human gene SLC25A20;CACT;CAC (NP_000378), a gene associated with Carnitine-acylcarnitine translocase deficiency (3).
BioGrid reports that CG16944 interacts with CG16884 CG17158 CG18217 CG18476 CG31482 CG4463 .
TRiP has 3 RNAi stocks for FBgn0003360 available for purchase.
VDRC has 5 RNAi stocks for FBgn0003360 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4088 ± 85	4 of 4	1.00	None
Head	4886 ± 180	4 of 4	1.20	None
Eye	6243 ± 86	4 of 4	1.48	Up
Thoracicoabdominal ganglion	5600 ± 177	4 of 4	1.30	Up
Salivary gland	9963 ± 447	4 of 4	2.37	Up
Crop	5047 ± 293	4 of 4	1.20	None
Midgut	3381 ± 87	4 of 4	0.80	Down
Tubule	5904 ± 186	4 of 4	1.40	Up
Hindgut	5264 ± 120	4 of 4	1.30	Up
Heart	5486 ± 298	4 of 4	1.30	Up
Fat body	5945 ± 874	4 of 4	1.41	Up
Ovary	2743 ± 6	4 of 4	0.70	Down
Testis	467 ± 20	4 of 4	0.10	Down
Male accessory glands	3570 ± 89	4 of 4	0.80	None
Virgin spermatheca	5595 ± 137	4 of 4	1.33	Up
Mated spermatheca	5280 ± 285	4 of 4	1.25	Up
Adult carcass	7528 ± 487	4 of 4	1.80	Up
Larval CNS	2869 ± 120	4 of 4	0.68	Down
Larval Salivary gland	4445 ± 152	4 of 4	1.06	None
Larval midgut	5345 ± 238	4 of 4	1.27	Up
Larval tubule	2502 ± 300	4 of 4	0.60	Down
Larval hindgut	5279 ± 66	4 of 4	1.25	Up
Larval fat body	1313 ± 182	4 of 4	0.30	Down
Larval trachea	3440 ± 99	4 of 4	0.82	None
Larval carcass	5615 ± 506	4 of 4	1.33	None
S2 cells (growing)	2282 ± 8	4 of 4	0.54	Down
Whole fly	4210 ± 254	4 of 4

la costa /// lethal(1)9Ed (lcs /// sesB):

Annotation Number : CG12794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028583
Gbrowse : chrX:21267753-21268326 (-) // 100.0 //
Probeset : 1641567_at
Accessions : protein= NP_511109; /// NP_523436; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_078712; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0028583.
BioGrid reports that CG12794 interacts with CG4035 CG5009 CG5546 CG7967 CG9632 .
TRiP has 1 RNAi stocks for FBgn0028583 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028583 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.00	Down
Head	1554 ± 544	4 of 4	0.30	Down
Eye	506 ± 255	4 of 4	0.11	Down
Thoracicoabdominal ganglion	3712 ± 911	4 of 4	0.80	None
Salivary gland	20997 ± 1141	4 of 4	4.70	Up
Crop	8597 ± 596	4 of 4	1.90	Up
Midgut	107 ± 5	4 of 4	0.00	Down
Tubule	399 ± 391	0 of 4	0.10	Down
Hindgut	25 ± 3	2 of 4	0.00	Down
Heart	36 ± 6	4 of 4	0.01	Down
Fat body	208 ± 335	2 of 4	0.05	Down
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	6 ± 1	0 of 4	0.00	Down
Male accessory glands	12 ± 2	0 of 4	0.00	Down
Virgin spermatheca	26 ± 9	2 of 4	0.01	Down
Mated spermatheca	12 ± 1	1 of 4	0.00	Down
Adult carcass	7375 ± 692	4 of 4	1.60	Up
Larval CNS	6 ± 2	0 of 4	0.00	Down
Larval Salivary gland	2027 ± 612	4 of 4	0.45	Down
Larval midgut	49 ± 7	4 of 4	0.01	Down
Larval tubule	17 ± 3	0 of 4	0.00	Down
Larval hindgut	35 ± 1	4 of 4	0.01	Down
Larval fat body	13 ± 4	0 of 4	0.00	Down
Larval trachea	6 ± 7	1 of 4	0.00	Down
Larval carcass	15 ± 1	0 of 4	0.00	Down
S2 cells (growing)	33 ± 2	4 of 4	0.01	Down
Whole fly	4472 ± 204	4 of 4

/// lethal(1)9Ed (CG8664 /// sesB):

Annotation Number : CG8664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030836
Gbrowse : chrX:17175805-17176744 (-) // 100.0 //
Probeset : 1636618_at
Accessions : protein= NP_511109; /// NP_573211; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_132983; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0030836.
VDRC has 5 RNAi stocks for FBgn0030836 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.50	None
Head	12 ± 1	0 of 4	1.30	None
Eye	1 ± 0	0 of 4	0.17	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.50	Down
Salivary gland	3 ± 1	0 of 4	0.30	Down
Crop	15 ± 2	0 of 4	1.60	None
Midgut	52 ± 2	4 of 4	5.10	Up
Tubule	6 ± 1	0 of 4	0.60	Down
Hindgut	10 ± 1	0 of 4	1.00	None
Heart	3 ± 1	0 of 4	0.31	Down
Fat body	3 ± 1	0 of 4	0.35	Down
Ovary	5 ± 0	0 of 4	0.60	Down
Testis	15 ± 1	0 of 4	1.60	Up
Male accessory glands	7 ± 2	0 of 4	0.70	None
Virgin spermatheca	3 ± 1	0 of 4	0.38	Down
Mated spermatheca	3 ± 1	0 of 4	0.37	Down
Adult carcass	14 ± 3	0 of 4	1.40	None
Larval CNS	1 ± 0	0 of 4	0.13	Down
Larval Salivary gland	1 ± 0	0 of 4	0.18	Down
Larval midgut	6247 ± 177	4 of 4	612.52	Up
Larval tubule	5 ± 1	0 of 4	0.50	Down
Larval hindgut	11 ± 2	0 of 4	1.15	None
Larval fat body	28 ± 19	1 of 4	2.80	None
Larval trachea	52 ± 88	1 of 4	5.15	None
Larval carcass	1 ± 0	0 of 4	0.18	Down
S2 cells (growing)	5 ± 1	0 of 4	0.58	None
Whole fly	10 ± 1	1 of 4

Looking for FBgn0003360. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720