FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003371 through 18771 annotations produced 3 hits

chrX:2527982-2569654 (+) // 99.55 // (Glycogen Synthase Kinase 3):

Annotation Number : CG2621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630774_s_at
Accessions : protein= , nucleotide= NP_001036259; /// NP_001096870; /// NP_001162649; /// NP_001162650; /// NP_476714; /// NP_476715; /// NP_476716; /// NP_599105; /// NP_726822; /// NP_726823; /// NP_996334; /// NP_996335; /// NP_996336; /// NP_996337; /// NP_996338;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay //
FlyMine data for full length.
Homophila reports that CG2621 is a close match (8e-11) to human gene LKB1;PJS;STK11 (NP_000446), a gene associated with Melanoma, malignant sporadic (3);Pancreatic cancer, sporadic (3);Peutz-Jeghers syndrome, 175200 (3);Testicular tumor, sporadic, 273300 (3).
BioGrid reports that CG2621 interacts with CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG5942 CG4379 CG4379 CG10488 CG17697 CG17697 CG8118 CG18740 CG11614 CG7467 CG7467 CG1451 CG7926 CG3936 CG3936 CG6054 CG15319 CG17964 CG11561 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	193 ± 10	4 of 4	1.20	None
Head	216 ± 12	4 of 4	1.40	Up
Eye	263 ± 15	4 of 4	1.65	Up
Thoracicoabdominal ganglion	232 ± 2	4 of 4	1.50	Up
Salivary gland	523 ± 14	4 of 4	3.28	Up
Crop	233 ± 1	4 of 4	1.50	Up
Midgut	202 ± 4	4 of 4	1.30	Up
Tubule	852 ± 44	4 of 4	5.30	Up
Hindgut	417 ± 20	4 of 4	2.60	Up
Heart	451 ± 25	4 of 4	2.83	Up
Fat body	547 ± 76	4 of 4	3.43	Up
Ovary	74 ± 2	4 of 4	0.50	Down
Testis	66 ± 6	4 of 4	0.40	Down
Male accessory glands	319 ± 11	4 of 4	2.00	Up
Virgin spermatheca	354 ± 16	4 of 4	2.22	Up
Mated spermatheca	289 ± 12	4 of 4	1.81	Up
Adult carcass	440 ± 46	4 of 4	2.80	Up
Larval CNS	222 ± 10	4 of 4	1.40	Up
Larval Salivary gland	383 ± 28	4 of 4	2.41	Up
Larval midgut	410 ± 54	4 of 4	2.57	Up
Larval tubule	956 ± 18	4 of 4	6.00	Up
Larval hindgut	547 ± 44	4 of 4	3.43	Up
Larval fat body	387 ± 19	4 of 4	2.40	Up
Larval trachea	316 ± 21	4 of 4	1.99	Up
Larval carcass	426 ± 45	4 of 4	2.68	Up
S2 cells (growing)	204 ± 3	4 of 4	1.28	Up
Whole fly	159 ± 9	4 of 4

Glycogen Synthase Kinase 3 (sgg):

Annotation Number : HDC17143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003371
Gbrowse : chrX:2530737-2535646 (+) // 100.0 //
Probeset : 1625322_at
Accessions : protein= NP_001036259; /// NP_001096870; /// NP_001162649; /// NP_001162650; /// NP_476714; /// NP_476715; /// NP_476716; /// NP_599105; /// NP_726822; /// NP_726823; /// NP_996334; /// NP_996335; /// NP_996336; /// NP_996337; /// NP_996338;, nucleotide= NM_001042794; /// NM_001103400; /// NM_001169178; /// NM_001169179; /// NM_057366; /// NM_057367; /// NM_057368; /// NM_134278; /// NM_166947; /// NM_166948; /// NM_206611; /// NM_206612; /// NM_206613; /// NM_206614; /// NM_206615;
Pathway : DNA-dependent // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay //
Interpro : 0045169 // fusome // inferred from direct assay
FlyMine data for FBgn0003371.
BDGP gene expression has embryonic in situ data for sgg: 4 pix of staining in 1 body parts.
TRiP has 4 RNAi stocks for FBgn0003371 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003371 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.60	None
Head	1 ± 1	0 of 4	2.20	None
Eye	1 ± 0	0 of 4	1.47	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	2.50	None
Salivary gland	2 ± 1	0 of 4	3.44	None
Crop	1 ± 0	0 of 4	1.90	None
Midgut	0 ± 0	0 of 4	1.10	None
Tubule	1 ± 0	0 of 4	1.90	Up
Hindgut	0 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	1.00	None
Fat body	1 ± 0	0 of 4	1.29	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	1.20	None
Male accessory glands	0 ± 0	0 of 4	0.80	None
Virgin spermatheca	2 ± 0	0 of 4	2.53	None
Mated spermatheca	0 ± 0	0 of 4	0.47	None
Adult carcass	0 ± 0	0 of 4	0.90	None
Larval CNS	2 ± 1	0 of 4	3.41	Up
Larval Salivary gland	2 ± 0	0 of 4	3.18	None
Larval midgut	0 ± 0	0 of 4	0.65	None
Larval tubule	0 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	1 of 4	1.85	None
Larval fat body	2 ± 1	0 of 4	3.10	None
Larval trachea	0 ± 0	0 of 4	0.68	None
Larval carcass	1 ± 0	0 of 4	1.18	None
S2 cells (growing)	2 ± 0	0 of 4	2.50	None
Whole fly	0 ± 0	0 of 4

chrX:2527982-2571879 (+) // 99.63 // (Glycogen Synthase Kinase 3):

Annotation Number : CG2621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623084_at
Accessions : protein= , nucleotide= NP_001036259; /// NP_001096870; /// NP_001162649; /// NP_001162650; /// NP_476714; /// NP_476715; /// NP_476716; /// NP_599105; /// NP_726822; /// NP_726823; /// NP_996334; /// NP_996335; /// NP_996336; /// NP_996337; /// NP_996338;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay //
FlyMine data for full length.
Homophila reports that CG2621 is a close match (8e-11) to human gene LKB1;PJS;STK11 (NP_000446), a gene associated with Melanoma, malignant sporadic (3);Pancreatic cancer, sporadic (3);Peutz-Jeghers syndrome, 175200 (3);Testicular tumor, sporadic, 273300 (3).
BioGrid reports that CG2621 interacts with CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG11579 CG5942 CG4379 CG4379 CG10488 CG17697 CG17697 CG8118 CG18740 CG11614 CG7467 CG7467 CG1451 CG7926 CG3936 CG3936 CG6054 CG15319 CG17964 CG11561 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	602 ± 11	4 of 4	27.40	Up
Head	206 ± 13	4 of 4	9.40	Up
Eye	858 ± 27	4 of 4	39.05	Up
Thoracicoabdominal ganglion	601 ± 39	4 of 4	27.30	Up
Salivary gland	5 ± 2	0 of 4	0.25	Down
Crop	11 ± 1	2 of 4	0.50	Down
Midgut	5 ± 0	0 of 4	0.20	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	7 ± 1	1 of 4	0.40	Down
Heart	11 ± 1	3 of 4	0.52	Down
Fat body	10 ± 4	2 of 4	0.46	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	5 ± 0	2 of 4	0.20	Down
Male accessory glands	13 ± 1	0 of 4	0.60	Down
Virgin spermatheca	5 ± 2	1 of 4	0.27	Down
Mated spermatheca	3 ± 1	0 of 4	0.16	Down
Adult carcass	19 ± 3	4 of 4	0.90	None
Larval CNS	183 ± 8	4 of 4	8.34	Up
Larval Salivary gland	15 ± 1	4 of 4	0.68	Down
Larval midgut	2 ± 1	0 of 4	0.12	Down
Larval tubule	5 ± 1	1 of 4	0.20	Down
Larval hindgut	12 ± 1	4 of 4	0.57	Down
Larval fat body	7 ± 2	0 of 4	0.30	Down
Larval trachea	15 ± 15	3 of 4	0.68	None
Larval carcass	17 ± 3	4 of 4	0.77	None
S2 cells (growing)	7 ± 1	1 of 4	0.33	Down
Whole fly	22 ± 1	4 of 4

Looking for FBgn0003371. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720