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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003374 through 18771 annotations produced 1 hits



salivary gland secretion protein 4 (Sgs4):

Annotation Number : CG12181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003374
Gbrowse : chrX:3143533-3145073 (+) // 100.0 //
Probeset : 1626630_at
Accessions : protein= NP_476717;, nucleotide= NM_057369;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable autho
Interpro : 0005198 // structural molecule activity // traceable author statement
FlyMine data for FBgn0003374.
BDGP gene expression has embryonic in situ data for Sgs4: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head0 00 of 4 0.30None
Eye3 10 of 4 1.51None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland13 30 of 4 6.34Up
Crop1 00 of 4 0.80None
Midgut1 00 of 4 0.70None
Tubule3 10 of 4 1.70None
Hindgut0 00 of 4 0.30None
Heart1 00 of 4 0.48None
Fat body8 50 of 4 3.92None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.70None
Male accessory glands2 10 of 4 1.20None
Virgin spermatheca3 10 of 4 1.67None
Mated spermatheca1 00 of 4 0.47None
Adult carcass0 00 of 4 0.40None
Larval CNS1 00 of 4 0.64None
Larval Salivary gland10141 9314 of 44887.36Up
Larval midgut28 54 of 413.59Up
Larval tubule3 20 of 4 1.40None
Larval hindgut4 20 of 4 2.29None
Larval fat body1067 3773 of 4514.60None
Larval trachea7 41 of 4 3.73None
Larval carcass3 00 of 4 1.76None
S2 cells (growing)1 00 of 4 0.90None
Whole fly2 10 of 4

Looking for FBgn0003374. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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