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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003375 through 18771 annotations produced 1 hits



Salivary gland secretion 5 (Sgs5):

Annotation Number : CG7596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003375
Gbrowse : chr3R:13421111-13421766 (+) // 100.0 //
Probeset : 1634997_at
Accessions : protein= NP_524388;, nucleotide= NM_079664;
Pathway : 0005576 // extracellular region // traceable author statement
Interpro : 0005198 // structural molecule activity // traceable author statement
FlyMine data for FBgn0003375.
BDGP gene expression has embryonic in situ data for Sgs5: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0003375 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.20None
Head2 ± 00 of 4 0.60None
Eye1 ± 00 of 4 0.27None
Thoracicoabdominal ganglion3 ± 10 of 4 0.80None
Salivary gland49 ± 51 of 411.14Up
Crop5 ± 10 of 4 1.20None
Midgut17 ± 40 of 4 4.00Up
Tubule7 ± 00 of 4 1.70Up
Hindgut7 ± 20 of 4 1.60None
Heart3 ± 10 of 4 0.85None
Fat body13 ± 90 of 4 3.09None
Ovary2 ± 10 of 4 0.50None
Testis4 ± 01 of 4 1.10None
Male accessory glands13 ± 40 of 4 3.10None
Virgin spermatheca4 ± 10 of 4 0.91None
Mated spermatheca4 ± 10 of 4 1.05None
Adult carcass9 ± 10 of 4 2.20None
Larval CNS4 ± 30 of 4 0.91None
Larval Salivary gland8829 ± 6074 of 42006.75Up
Larval midgut21 ± 61 of 4 4.91None
Larval tubule13 ± 30 of 4 3.10None
Larval hindgut6 ± 40 of 4 1.39None
Larval fat body1987 ± 7024 of 4451.70None
Larval trachea4 ± 20 of 4 1.03None
Larval carcass9 ± 40 of 4 2.20None
S2 cells (growing)4 ± 20 of 4 1.01None
Whole fly4 ± 10 of 4

Looking for FBgn0003375. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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