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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003377 through 18771 annotations produced 1 hits

group III (Sgs7):

Annotation Number : CG18087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003377
Gbrowse : chr3L:11502960-11503347 (+) // 100.0 //
Probeset : 1631053_at
Accessions : protein= NP_476718;, nucleotide= NM_057370;
Pathway : 0005576 // extracellular region // traceable author statement
Interpro : 0005198 // structural molecule activity // traceable author statement
FlyMine data for FBgn0003377.
VDRC has 2 RNAi stocks for FBgn0003377 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 30 of 4 3.90None
Head3 10 of 4 2.10None
Eye3 20 of 4 2.65None
Thoracicoabdominal ganglion2 00 of 4 1.40None
Salivary gland14 70 of 410.85None
Crop3 00 of 4 2.60None
Midgut1 00 of 4 0.90None
Tubule5 00 of 4 4.10Up
Hindgut3 10 of 4 2.80None
Heart2 10 of 4 1.85None
Fat body61 64 of 444.60Up
Ovary1 00 of 4 1.40None
Testis2 10 of 4 2.00None
Male accessory glands5 40 of 4 3.90None
Virgin spermatheca31 13 of 422.87Up
Mated spermatheca41 133 of 430.42None
Adult carcass2 00 of 4 1.90None
Larval CNS40 214 of 429.25Up
Larval Salivary gland7341 6864 of 45338.89Up
Larval midgut33 311 of 424.07None
Larval tubule6 20 of 4 4.40None
Larval hindgut17 31 of 412.78Up
Larval fat body3681 12934 of 42677.70None
Larval trachea14 121 of 410.60None
Larval carcass16 61 of 411.64None
S2 cells (growing)1 00 of 4 0.89None
Whole fly1 00 of 4

Looking for FBgn0003377. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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