FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003380 through 18771 annotations produced 6 hits

Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17833763-17933532 (-) // 100.0 //
Probeset : 1623917_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 5	4 of 4	14.50	Up
Head	18 ± 3	1 of 4	3.60	Up
Eye	149 ± 38	4 of 4	29.11	Up
Thoracicoabdominal ganglion	24 ± 1	2 of 4	4.80	Up
Salivary gland	19 ± 5	1 of 4	3.75	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	4 ± 1	0 of 4	0.90	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	24 ± 2	0 of 4	4.70	Up
Heart	15 ± 2	0 of 4	2.94	Up
Fat body	2 ± 1	0 of 4	0.48	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	1 ± 0	0 of 4	0.20	None
Male accessory glands	7 ± 3	0 of 4	1.40	None
Virgin spermatheca	4 ± 1	0 of 4	0.81	None
Mated spermatheca	6 ± 1	0 of 4	1.20	None
Adult carcass	6 ± 1	0 of 4	1.30	None
Larval CNS	19 ± 2	3 of 4	3.69	Up
Larval Salivary gland	2 ± 1	0 of 4	0.47	None
Larval midgut	6 ± 2	0 of 4	1.17	None
Larval tubule	5 ± 1	0 of 4	1.00	None
Larval hindgut	12 ± 1	0 of 4	2.36	Up
Larval fat body	4 ± 1	0 of 4	0.80	None
Larval trachea	4 ± 4	1 of 4	0.82	None
Larval carcass	18 ± 3	0 of 4	3.50	Up
S2 cells (growing)	3 ± 1	0 of 4	0.75	None
Whole fly	5 ± 1	0 of 4

():

Annotation Number : CG32552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:17954488-17957630 (-) // 100.0 //
Probeset : 1639174_at
Accessions : protein= , nucleotide=

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	60 ± 1	4 of 4	17.40	Up
Head	4 ± 0	0 of 4	1.40	None
Eye	2 ± 1	1 of 4	0.78	None
Thoracicoabdominal ganglion	15 ± 4	3 of 4	4.50	None
Salivary gland	15 ± 3	1 of 4	4.44	Up
Crop	4 ± 1	0 of 4	1.20	None
Midgut	5 ± 1	0 of 4	1.60	None
Tubule	4 ± 0	0 of 4	1.40	None
Hindgut	6 ± 1	1 of 4	1.80	None
Heart	1 ± 0	0 of 4	0.37	Down
Fat body	9 ± 3	2 of 4	2.81	Up
Ovary	3 ± 1	0 of 4	1.10	None
Testis	4 ± 1	1 of 4	1.20	None
Male accessory glands	4 ± 1	0 of 4	1.40	None
Virgin spermatheca	5 ± 1	1 of 4	1.67	None
Mated spermatheca	5 ± 2	1 of 4	1.64	None
Adult carcass	8 ± 2	0 of 4	2.40	None
Larval CNS	4 ± 0	2 of 4	1.42	None
Larval Salivary gland	3 ± 1	0 of 4	1.12	None
Larval midgut	9 ± 0	1 of 4	2.64	Up
Larval tubule	3 ± 1	0 of 4	0.90	None
Larval hindgut	3 ± 1	0 of 4	1.09	None
Larval fat body	4 ± 2	0 of 4	1.30	None
Larval trachea	1 ± 1	0 of 4	0.57	None
Larval carcass	7 ± 0	2 of 4	2.20	Up
S2 cells (growing)	5 ± 0	1 of 4	1.65	Up
Whole fly	3 ± 0	0 of 4

Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17844011-17909268 (-) // 100.0 //
Probeset : 1626802_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	676 ± 40	4 of 4	130.10	Up
Head	21 ± 0	4 of 4	4.10	Up
Eye	320 ± 76	4 of 4	61.63	Up
Thoracicoabdominal ganglion	544 ± 40	4 of 4	104.70	Up
Salivary gland	11 ± 2	1 of 4	2.18	Up
Crop	5 ± 1	2 of 4	1.10	None
Midgut	2 ± 0	0 of 4	0.40	Down
Tubule	4 ± 0	1 of 4	0.80	Down
Hindgut	27 ± 3	4 of 4	5.30	Up
Heart	17 ± 0	4 of 4	3.35	Up
Fat body	21 ± 6	4 of 4	4.07	Up
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	3 ± 0	1 of 4	0.60	None
Male accessory glands	2 ± 0	0 of 4	0.40	Down
Virgin spermatheca	13 ± 2	4 of 4	2.65	None
Mated spermatheca	18 ± 4	4 of 4	3.60	None
Adult carcass	17 ± 5	2 of 4	3.40	None
Larval CNS	153 ± 30	4 of 4	29.57	Up
Larval Salivary gland	25 ± 5	4 of 4	4.95	Up
Larval midgut	3 ± 2	1 of 4	0.58	None
Larval tubule	2 ± 1	0 of 4	0.50	None
Larval hindgut	10 ± 1	4 of 4	1.93	None
Larval fat body	2 ± 1	0 of 4	0.40	None
Larval trachea	4 ± 5	1 of 4	0.90	None
Larval carcass	20 ± 2	4 of 4	3.88	Up
S2 cells (growing)	0 ± 0	0 of 4	0.03	Down
Whole fly	5 ± 0	2 of 4

():

Annotation Number : HDC19485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:17934333-17935180 (-) // 100.0 //
Probeset : 1632879_at
Accessions : protein= , nucleotide=

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	3 of 4	1.70	None
Head	9 ± 3	0 of 4	1.40	None
Eye	4 ± 1	0 of 4	0.72	None
Thoracicoabdominal ganglion	7 ± 3	0 of 4	1.10	None
Salivary gland	5 ± 2	0 of 4	0.78	None
Crop	4 ± 2	0 of 4	0.70	None
Midgut	5 ± 2	0 of 4	0.80	None
Tubule	7 ± 0	0 of 4	1.10	None
Hindgut	6 ± 0	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.16	None
Fat body	15 ± 0	0 of 4	2.28	Up
Ovary	1 ± 0	0 of 4	0.20	None
Testis	3 ± 1	0 of 4	0.50	None
Male accessory glands	3 ± 1	0 of 4	0.50	None
Virgin spermatheca	11 ± 1	0 of 4	1.73	None
Mated spermatheca	7 ± 1	0 of 4	1.14	None
Adult carcass	4 ± 1	0 of 4	0.70	None
Larval CNS	9 ± 3	0 of 4	1.42	None
Larval Salivary gland	6 ± 2	0 of 4	0.89	None
Larval midgut	6 ± 1	0 of 4	0.97	None
Larval tubule	5 ± 1	0 of 4	0.90	None
Larval hindgut	7 ± 0	0 of 4	1.05	None
Larval fat body	2 ± 0	0 of 4	0.40	None
Larval trachea	4 ± 3	0 of 4	0.60	None
Larval carcass	6 ± 1	0 of 4	0.93	None
S2 cells (growing)	5 ± 1	0 of 4	0.86	None
Whole fly	6 ± 2	0 of 4

Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17844011-17909268 (-) // 100.0 //
Probeset : 1623933_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	530 ± 29	4 of 4	61.70	Up
Head	15 ± 2	4 of 4	1.80	None
Eye	106 ± 17	4 of 4	12.38	Up
Thoracicoabdominal ganglion	312 ± 22	4 of 4	36.40	Up
Salivary gland	12 ± 2	3 of 4	1.50	None
Crop	6 ± 2	2 of 4	0.80	None
Midgut	10 ± 1	4 of 4	1.20	None
Tubule	7 ± 0	2 of 4	0.80	Down
Hindgut	19 ± 2	4 of 4	2.30	Up
Heart	13 ± 1	4 of 4	1.56	None
Fat body	26 ± 7	4 of 4	3.10	Up
Ovary	1 ± 0	1 of 4	0.20	Down
Testis	5 ± 1	3 of 4	0.60	None
Male accessory glands	6 ± 0	0 of 4	0.80	None
Virgin spermatheca	20 ± 1	4 of 4	2.42	Up
Mated spermatheca	27 ± 8	3 of 4	3.15	None
Adult carcass	18 ± 3	4 of 4	2.20	None
Larval CNS	160 ± 30	4 of 4	18.69	Up
Larval Salivary gland	16 ± 3	3 of 4	1.96	None
Larval midgut	9 ± 0	4 of 4	1.11	None
Larval tubule	5 ± 1	2 of 4	0.60	Down
Larval hindgut	11 ± 1	4 of 4	1.30	None
Larval fat body	4 ± 1	0 of 4	0.50	Down
Larval trachea	5 ± 2	1 of 4	0.62	None
Larval carcass	17 ± 1	4 of 4	1.98	Up
S2 cells (growing)	1 ± 0	1 of 4	0.23	Down
Whole fly	8 ± 0	4 of 4

Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17823291-17909268 (-) // 100.0 //
Probeset : 1641501_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	777 ± 28	4 of 4	47.80	Up
Head	67 ± 4	4 of 4	4.10	Up
Eye	260 ± 38	4 of 4	16.00	Up
Thoracicoabdominal ganglion	674 ± 30	4 of 4	41.50	Up
Salivary gland	11 ± 3	0 of 4	0.72	None
Crop	6 ± 2	1 of 4	0.40	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	4 ± 1	0 of 4	0.30	Down
Hindgut	12 ± 1	1 of 4	0.80	None
Heart	23 ± 0	4 of 4	1.46	None
Fat body	11 ± 2	0 of 4	0.67	None
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	1 ± 1	0 of 4	0.10	Down
Male accessory glands	4 ± 1	0 of 4	0.30	Down
Virgin spermatheca	8 ± 1	0 of 4	0.55	None
Mated spermatheca	15 ± 4	3 of 4	0.92	None
Adult carcass	21 ± 2	2 of 4	1.30	None
Larval CNS	116 ± 16	4 of 4	7.18	Up
Larval Salivary gland	7 ± 1	0 of 4	0.46	Down
Larval midgut	1 ± 0	0 of 4	0.09	Down
Larval tubule	5 ± 1	0 of 4	0.40	Down
Larval hindgut	7 ± 0	0 of 4	0.47	Down
Larval fat body	2 ± 0	0 of 4	0.10	Down
Larval trachea	8 ± 5	2 of 4	0.52	None
Larval carcass	25 ± 1	4 of 4	1.57	Up
S2 cells (growing)	1 ± 0	0 of 4	0.10	Down
Whole fly	16 ± 2	3 of 4

Looking for FBgn0003380. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720