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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003380 through 18771 annotations produced 6 hits



Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17823291-17909268 (-) // 100.0 //
Probeset : 1641501_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain777 284 of 447.80Up
Head67 44 of 4 4.10Up
Eye260 384 of 416.00Up
Thoracicoabdominal ganglion674 304 of 441.50Up
Salivary gland11 30 of 4 0.72None
Crop6 21 of 4 0.40Down
Midgut2 00 of 4 0.10Down
Tubule4 10 of 4 0.30Down
Hindgut12 11 of 4 0.80None
Heart23 04 of 4 1.46None
Fat body11 20 of 4 0.67None
Ovary2 10 of 4 0.10Down
Testis1 10 of 4 0.10Down
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca8 10 of 4 0.55None
Mated spermatheca15 43 of 4 0.92None
Adult carcass21 22 of 4 1.30None
Larval CNS116 164 of 4 7.18Up
Larval Salivary gland7 10 of 4 0.46Down
Larval midgut1 00 of 4 0.09Down
Larval tubule5 10 of 4 0.40Down
Larval hindgut7 00 of 4 0.47Down
Larval fat body2 00 of 4 0.10Down
Larval trachea8 52 of 4 0.52None
Larval carcass25 14 of 4 1.57Up
S2 cells (growing)1 00 of 4 0.10Down
Whole fly16 23 of 4



():

Annotation Number : CG32552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:17954488-17957630 (-) // 100.0 //
Probeset : 1639174_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 14 of 417.40Up
Head4 00 of 4 1.40None
Eye2 11 of 4 0.78None
Thoracicoabdominal ganglion15 43 of 4 4.50None
Salivary gland15 31 of 4 4.44Up
Crop4 10 of 4 1.20None
Midgut5 10 of 4 1.60None
Tubule4 00 of 4 1.40None
Hindgut6 11 of 4 1.80None
Heart1 00 of 4 0.37Down
Fat body9 32 of 4 2.81Up
Ovary3 10 of 4 1.10None
Testis4 11 of 4 1.20None
Male accessory glands4 10 of 4 1.40None
Virgin spermatheca5 11 of 4 1.67None
Mated spermatheca5 21 of 4 1.64None
Adult carcass8 20 of 4 2.40None
Larval CNS4 02 of 4 1.42None
Larval Salivary gland3 10 of 4 1.12None
Larval midgut9 01 of 4 2.64Up
Larval tubule3 10 of 4 0.90None
Larval hindgut3 10 of 4 1.09None
Larval fat body4 20 of 4 1.30None
Larval trachea1 10 of 4 0.57None
Larval carcass7 02 of 4 2.20Up
S2 cells (growing)5 01 of 4 1.65Up
Whole fly3 00 of 4



Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17844011-17909268 (-) // 100.0 //
Probeset : 1626802_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain676 404 of 4130.10Up
Head21 04 of 4 4.10Up
Eye320 764 of 461.63Up
Thoracicoabdominal ganglion544 404 of 4104.70Up
Salivary gland11 21 of 4 2.18Up
Crop5 12 of 4 1.10None
Midgut2 00 of 4 0.40Down
Tubule4 01 of 4 0.80Down
Hindgut27 34 of 4 5.30Up
Heart17 04 of 4 3.35Up
Fat body21 64 of 4 4.07Up
Ovary0 00 of 4 0.00Down
Testis3 01 of 4 0.60None
Male accessory glands2 00 of 4 0.40Down
Virgin spermatheca13 24 of 4 2.65None
Mated spermatheca18 44 of 4 3.60None
Adult carcass17 52 of 4 3.40None
Larval CNS153 304 of 429.57Up
Larval Salivary gland25 54 of 4 4.95Up
Larval midgut3 21 of 4 0.58None
Larval tubule2 10 of 4 0.50None
Larval hindgut10 14 of 4 1.93None
Larval fat body2 10 of 4 0.40None
Larval trachea4 51 of 4 0.90None
Larval carcass20 24 of 4 3.88Up
S2 cells (growing)0 00 of 4 0.03Down
Whole fly5 02 of 4



Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17844011-17909268 (-) // 100.0 //
Probeset : 1623933_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain530 294 of 461.70Up
Head15 24 of 4 1.80None
Eye106 174 of 412.38Up
Thoracicoabdominal ganglion312 224 of 436.40Up
Salivary gland12 23 of 4 1.50None
Crop6 22 of 4 0.80None
Midgut10 14 of 4 1.20None
Tubule7 02 of 4 0.80Down
Hindgut19 24 of 4 2.30Up
Heart13 14 of 4 1.56None
Fat body26 74 of 4 3.10Up
Ovary1 01 of 4 0.20Down
Testis5 13 of 4 0.60None
Male accessory glands6 00 of 4 0.80None
Virgin spermatheca20 14 of 4 2.42Up
Mated spermatheca27 83 of 4 3.15None
Adult carcass18 34 of 4 2.20None
Larval CNS160 304 of 418.69Up
Larval Salivary gland16 33 of 4 1.96None
Larval midgut9 04 of 4 1.11None
Larval tubule5 12 of 4 0.60Down
Larval hindgut11 14 of 4 1.30None
Larval fat body4 10 of 4 0.50Down
Larval trachea5 21 of 4 0.62None
Larval carcass17 14 of 4 1.98Up
S2 cells (growing)1 01 of 4 0.23Down
Whole fly8 04 of 4



():

Annotation Number : HDC19485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:17934333-17935180 (-) // 100.0 //
Probeset : 1632879_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 13 of 4 1.70None
Head9 30 of 4 1.40None
Eye4 10 of 4 0.72None
Thoracicoabdominal ganglion7 30 of 4 1.10None
Salivary gland5 20 of 4 0.78None
Crop4 20 of 4 0.70None
Midgut5 20 of 4 0.80None
Tubule7 00 of 4 1.10None
Hindgut6 00 of 4 0.90None
Heart1 00 of 4 0.16None
Fat body15 00 of 4 2.28Up
Ovary1 00 of 4 0.20None
Testis3 10 of 4 0.50None
Male accessory glands3 10 of 4 0.50None
Virgin spermatheca11 10 of 4 1.73None
Mated spermatheca7 10 of 4 1.14None
Adult carcass4 10 of 4 0.70None
Larval CNS9 30 of 4 1.42None
Larval Salivary gland6 20 of 4 0.89None
Larval midgut6 10 of 4 0.97None
Larval tubule5 10 of 4 0.90None
Larval hindgut7 00 of 4 1.05None
Larval fat body2 00 of 4 0.40None
Larval trachea4 30 of 4 0.60None
Larval carcass6 10 of 4 0.93None
S2 cells (growing)5 10 of 4 0.86None
Whole fly6 20 of 4



Shaker (Sh):

Annotation Number : CG12348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003380
Gbrowse : chrX:17833763-17933532 (-) // 100.0 //
Probeset : 1623917_a_at
Accessions : protein= NP_001162788; /// NP_523393; /// NP_728120; /// NP_728122; /// NP_728123; /// NP_728124; /// NP_996497; /// NP_996498;, nucleotide= NM_001169317; /// NM_078669; /// NM_167592; /// NM_167594; /// NM_167595; /// NM_167596; /// NM_206774; /// NM_206775;
Pathway : sleep // inferred from mutant phenotype /// 0048150 // behavioral response to ether // non-traceable author statement /
Interpro : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated p
FlyMine data for FBgn0003380.
Homophila reports that CG12348 is a close match (5e-15) to human gene (NP_598004), a gene associated with .
BioGrid reports that CG12348 interacts with CG31092 CG9193 CG7727 CG7727 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG10952 CG7765 CG1725 CG11680 CG9907 CG9907 CG9907 CG9907 .
TRiP has 1 RNAi stocks for FBgn0003380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 54 of 414.50Up
Head18 31 of 4 3.60Up
Eye149 384 of 429.11Up
Thoracicoabdominal ganglion24 12 of 4 4.80Up
Salivary gland19 51 of 4 3.75None
Crop3 10 of 4 0.70None
Midgut4 10 of 4 0.90None
Tubule3 00 of 4 0.70Down
Hindgut24 20 of 4 4.70Up
Heart15 20 of 4 2.94Up
Fat body2 10 of 4 0.48None
Ovary1 00 of 4 0.20None
Testis1 00 of 4 0.20None
Male accessory glands7 30 of 4 1.40None
Virgin spermatheca4 10 of 4 0.81None
Mated spermatheca6 10 of 4 1.20None
Adult carcass6 10 of 4 1.30None
Larval CNS19 23 of 4 3.69Up
Larval Salivary gland2 10 of 4 0.47None
Larval midgut6 20 of 4 1.17None
Larval tubule5 10 of 4 1.00None
Larval hindgut12 10 of 4 2.36Up
Larval fat body4 10 of 4 0.80None
Larval trachea4 41 of 4 0.82None
Larval carcass18 30 of 4 3.50Up
S2 cells (growing)3 10 of 4 0.75None
Whole fly5 10 of 4

Looking for FBgn0003380. 6 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime