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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003382 through 18771 annotations produced 1 hits



kojak (sha):

Annotation Number : CG13209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003382
Gbrowse : chr2R:7216766-7223482 (+) // 100.0 //
Probeset : 1623668_at
Accessions : protein= NP_001137645; /// NP_610672;, nucleotide= NM_001144173; /// NM_136828;
Pathway : 0005938 // cell cortex // inferred from direct assay
FlyMine data for FBgn0003382.
BioGrid reports that CG13209 interacts with CG9949 .
VDRC has 1 RNAi stocks for FBgn0003382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 2.70None
Head0 00 of 4 0.80None
Eye1 00 of 4 1.68None
Thoracicoabdominal ganglion4 00 of 4 4.50Up
Salivary gland9 20 of 410.39Up
Crop2 10 of 4 2.60None
Midgut3 10 of 4 3.30None
Tubule3 00 of 4 3.70Up
Hindgut1 00 of 4 1.10None
Heart1 00 of 4 1.45None
Fat body2 10 of 4 2.18None
Ovary2 10 of 4 2.10None
Testis4 21 of 4 4.60None
Male accessory glands2 00 of 4 2.60Up
Virgin spermatheca2 00 of 4 2.87None
Mated spermatheca4 20 of 4 4.55None
Adult carcass4 20 of 4 4.60None
Larval CNS2 10 of 4 2.92Up
Larval Salivary gland3 10 of 4 3.97None
Larval midgut3 10 of 4 3.39None
Larval tubule3 10 of 4 4.00None
Larval hindgut3 10 of 4 3.55None
Larval fat body7 21 of 4 7.70Up
Larval trachea1 10 of 4 1.29None
Larval carcass6 12 of 4 6.66Up
S2 cells (growing)2 00 of 4 2.21None
Whole fly1 00 of 4

Looking for FBgn0003382. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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