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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003388 through 18771 annotations produced 2 hits



shade (shd):

Annotation Number : CG13478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003388
Gbrowse : chr3L:14612929-14614945 (+) // 100.0 //
Probeset : 1638040_at
Accessions : protein= NP_996074;, nucleotide= NM_206352;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structu
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004501 // ecdysone 20-monooxygenase activi
FlyMine data for FBgn0003388.
Homophila reports that CG13478 is a close match (7e-11) to human gene CYP27B1;PDDR;VDD1 (NP_000776), a gene associated with Vitamin D-dependent rickets, type I, 264700 (3).
VDRC has 3 RNAi stocks for FBgn0003388 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 0.40Down
Head11 ± 24 of 4 0.90None
Eye6 ± 10 of 4 0.47None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland36 ± 33 of 4 2.87Up
Crop10 ± 22 of 4 0.80None
Midgut24 ± 41 of 4 1.90None
Tubule6 ± 10 of 4 0.50Down
Hindgut19 ± 13 of 4 1.50None
Heart14 ± 14 of 4 1.13None
Fat body24 ± 34 of 4 1.87Up
Ovary7 ± 03 of 4 0.60None
Testis55 ± 24 of 4 4.30Up
Male accessory glands14 ± 52 of 4 1.20None
Virgin spermatheca12 ± 12 of 4 0.95None
Mated spermatheca14 ± 11 of 4 1.13None
Adult carcass22 ± 13 of 4 1.80Up
Larval CNS8 ± 13 of 4 0.69None
Larval Salivary gland40 ± 34 of 4 3.17Up
Larval midgut360 ± 534 of 428.19Up
Larval tubule330 ± 54 of 425.80Up
Larval hindgut130 ± 144 of 410.17Up
Larval fat body373 ± 134 of 429.20Up
Larval trachea33 ± 104 of 4 2.61Up
Larval carcass97 ± 204 of 4 7.62Up
S2 cells (growing)7 ± 11 of 4 0.60None
Whole fly12 ± 23 of 4



shade (shd):

Annotation Number : S.C3L001831
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003388
Gbrowse : chr3L:14612544-14612827 (+) // 100.0 //
Probeset : 1635002_at
Accessions : protein= NP_996074;, nucleotide= NM_206352;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structu
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004501 // ecdysone 20-monooxygenase activi
FlyMine data for FBgn0003388.
VDRC has 3 RNAi stocks for FBgn0003388 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.00None
Head8 ± 22 of 4 1.40None
Eye5 ± 10 of 4 0.89None
Thoracicoabdominal ganglion5 ± 10 of 4 0.90None
Salivary gland14 ± 30 of 4 2.35None
Crop2 ± 10 of 4 0.40None
Midgut9 ± 20 of 4 1.60None
Tubule5 ± 10 of 4 0.90None
Hindgut7 ± 10 of 4 1.30None
Heart1 ± 00 of 4 0.25Down
Fat body7 ± 40 of 4 1.27None
Ovary3 ± 10 of 4 0.50None
Testis3 ± 10 of 4 0.50None
Male accessory glands9 ± 10 of 4 1.50None
Virgin spermatheca4 ± 10 of 4 0.73None
Mated spermatheca4 ± 10 of 4 0.66None
Adult carcass7 ± 10 of 4 1.30None
Larval CNS3 ± 20 of 4 0.50None
Larval Salivary gland2 ± 00 of 4 0.47None
Larval midgut39 ± 114 of 4 6.63None
Larval tubule76 ± 44 of 412.70Up
Larval hindgut20 ± 12 of 4 3.33Up
Larval fat body100 ± 74 of 416.70Up
Larval trachea1 ± 00 of 4 0.21Down
Larval carcass15 ± 40 of 4 2.56None
S2 cells (growing)6 ± 10 of 4 1.03None
Whole fly6 ± 10 of 4

Looking for FBgn0003388. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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