FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003390 through 18771 annotations produced 1 hits

shifted (shf):

Annotation Number : CG3135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003390
Gbrowse : chrX:6665476-6673692 (-) // 100.0 //
Probeset : 1635403_at
Accessions : protein= NP_572349;, nucleotide= NM_132121;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0003390.
Homophila reports that CG3135 is a close match (4e-11) to human gene FBN2;CCA (NP_001990), a gene associated with Contractural arachnodactyly, congenital (3).
VDRC has 4 RNAi stocks for FBgn0003390 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 0	4 of 4	0.30	Down
Head	154 ± 16	4 of 4	2.70	Up
Eye	96 ± 14	4 of 4	1.66	None
Thoracicoabdominal ganglion	13 ± 1	0 of 4	0.20	Down
Salivary gland	10 ± 3	0 of 4	0.18	Down
Crop	1577 ± 55	4 of 4	27.20	Up
Midgut	98 ± 4	4 of 4	1.70	Up
Tubule	37 ± 4	3 of 4	0.60	Down
Hindgut	270 ± 12	4 of 4	4.70	Up
Heart	249 ± 29	4 of 4	4.30	Up
Fat body	312 ± 56	4 of 4	5.40	Up
Ovary	5 ± 1	0 of 4	0.10	Down
Testis	33 ± 2	4 of 4	0.60	Down
Male accessory glands	5 ± 2	0 of 4	0.10	Down
Virgin spermatheca	297 ± 24	4 of 4	5.13	Up
Mated spermatheca	284 ± 63	4 of 4	4.90	Up
Adult carcass	165 ± 15	4 of 4	2.90	Up
Larval CNS	60 ± 4	4 of 4	1.04	None
Larval Salivary gland	15 ± 3	0 of 4	0.27	Down
Larval midgut	31 ± 2	0 of 4	0.55	Down
Larval tubule	10 ± 0	0 of 4	0.20	Down
Larval hindgut	47 ± 2	4 of 4	0.82	Down
Larval fat body	39 ± 1	4 of 4	0.70	Down
Larval trachea	39 ± 2	4 of 4	0.69	Down
Larval carcass	73 ± 10	4 of 4	1.27	None
S2 cells (growing)	18 ± 1	0 of 4	0.32	Down
Whole fly	57 ± 1	4 of 4

Looking for FBgn0003390. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720