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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003390 through 18771 annotations produced 1 hits



shifted (shf):

Annotation Number : CG3135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003390
Gbrowse : chrX:6665476-6673692 (-) // 100.0 //
Probeset : 1635403_at
Accessions : protein= NP_572349;, nucleotide= NM_132121;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0003390.
Homophila reports that CG3135 is a close match (4e-11) to human gene FBN2;CCA (NP_001990), a gene associated with Contractural arachnodactyly, congenital (3).
VDRC has 4 RNAi stocks for FBgn0003390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 04 of 4 0.30Down
Head154 164 of 4 2.70Up
Eye96 144 of 4 1.66None
Thoracicoabdominal ganglion13 10 of 4 0.20Down
Salivary gland10 30 of 4 0.18Down
Crop1577 554 of 427.20Up
Midgut98 44 of 4 1.70Up
Tubule37 43 of 4 0.60Down
Hindgut270 124 of 4 4.70Up
Heart249 294 of 4 4.30Up
Fat body312 564 of 4 5.40Up
Ovary5 10 of 4 0.10Down
Testis33 24 of 4 0.60Down
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca297 244 of 4 5.13Up
Mated spermatheca284 634 of 4 4.90Up
Adult carcass165 154 of 4 2.90Up
Larval CNS60 44 of 4 1.04None
Larval Salivary gland15 30 of 4 0.27Down
Larval midgut31 20 of 4 0.55Down
Larval tubule10 00 of 4 0.20Down
Larval hindgut47 24 of 4 0.82Down
Larval fat body39 14 of 4 0.70Down
Larval trachea39 24 of 4 0.69Down
Larval carcass73 104 of 4 1.27None
S2 cells (growing)18 10 of 4 0.32Down
Whole fly57 14 of 4

Looking for FBgn0003390. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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