FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003392 through 18771 annotations produced 3 hits

shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786261-15798000 (+) // 100.0 //
Probeset : 1625442_a_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1045 ± 25	4 of 4	11.40	Up
Head	311 ± 13	4 of 4	3.40	Up
Eye	327 ± 18	4 of 4	3.57	Up
Thoracicoabdominal ganglion	1233 ± 35	4 of 4	13.50	Up
Salivary gland	52 ± 7	3 of 4	0.58	Down
Crop	57 ± 2	4 of 4	0.60	Down
Midgut	75 ± 4	4 of 4	0.80	None
Tubule	70 ± 2	4 of 4	0.80	Down
Hindgut	63 ± 3	4 of 4	0.70	Down
Heart	65 ± 4	4 of 4	0.72	Down
Fat body	31 ± 4	2 of 4	0.34	Down
Ovary	80 ± 2	4 of 4	0.90	None
Testis	91 ± 6	4 of 4	1.00	None
Male accessory glands	28 ± 3	3 of 4	0.30	Down
Virgin spermatheca	24 ± 3	0 of 4	0.26	Down
Mated spermatheca	22 ± 2	0 of 4	0.24	Down
Adult carcass	60 ± 4	4 of 4	0.70	Down
Larval CNS	275 ± 27	4 of 4	3.01	Up
Larval Salivary gland	49 ± 4	4 of 4	0.54	Down
Larval midgut	109 ± 3	4 of 4	1.20	None
Larval tubule	102 ± 3	4 of 4	1.10	None
Larval hindgut	86 ± 2	4 of 4	0.95	None
Larval fat body	38 ± 2	3 of 4	0.40	Down
Larval trachea	70 ± 8	4 of 4	0.77	None
Larval carcass	60 ± 4	4 of 4	0.66	Down
S2 cells (growing)	307 ± 6	4 of 4	3.36	Up
Whole fly	91 ± 7	4 of 4

shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786986-15800285 (+) // 100.0 //
Probeset : 1637637_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	709 ± 16	4 of 4	6.40	Up
Head	175 ± 22	4 of 4	1.60	None
Eye	225 ± 13	4 of 4	2.02	Up
Thoracicoabdominal ganglion	619 ± 15	4 of 4	5.50	Up
Salivary gland	112 ± 6	4 of 4	1.01	None
Crop	95 ± 6	4 of 4	0.90	None
Midgut	99 ± 0	4 of 4	0.90	None
Tubule	94 ± 2	4 of 4	0.80	Down
Hindgut	110 ± 1	4 of 4	1.00	None
Heart	130 ± 8	4 of 4	1.17	None
Fat body	62 ± 13	4 of 4	0.56	Down
Ovary	96 ± 3	4 of 4	0.90	None
Testis	383 ± 15	4 of 4	3.40	Up
Male accessory glands	76 ± 3	4 of 4	0.70	None
Virgin spermatheca	39 ± 2	4 of 4	0.36	Down
Mated spermatheca	52 ± 0	4 of 4	0.47	Down
Adult carcass	80 ± 8	4 of 4	0.70	None
Larval CNS	230 ± 44	4 of 4	2.07	Up
Larval Salivary gland	96 ± 1	4 of 4	0.86	None
Larval midgut	171 ± 2	4 of 4	1.54	Up
Larval tubule	150 ± 5	4 of 4	1.40	Up
Larval hindgut	177 ± 4	4 of 4	1.59	Up
Larval fat body	78 ± 11	4 of 4	0.70	None
Larval trachea	157 ± 7	4 of 4	1.41	Up
Larval carcass	181 ± 13	4 of 4	1.63	Up
S2 cells (growing)	383 ± 5	4 of 4	3.44	Up
Whole fly	111 ± 12	4 of 4

shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786921-15798517 (+) // 99.64 //
Probeset : 1628859_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	900 ± 32	4 of 4	14.10	Up
Head	252 ± 22	4 of 4	3.90	Up
Eye	714 ± 41	4 of 4	11.15	Up
Thoracicoabdominal ganglion	936 ± 42	4 of 4	14.60	Up
Salivary gland	56 ± 0	4 of 4	0.88	None
Crop	49 ± 2	4 of 4	0.80	None
Midgut	75 ± 3	4 of 4	1.20	None
Tubule	17 ± 1	4 of 4	0.30	Down
Hindgut	43 ± 2	4 of 4	0.70	None
Heart	140 ± 8	4 of 4	2.20	Up
Fat body	47 ± 1	4 of 4	0.75	None
Ovary	45 ± 0	4 of 4	0.70	None
Testis	14 ± 0	4 of 4	0.20	Down
Male accessory glands	51 ± 4	4 of 4	0.80	None
Virgin spermatheca	39 ± 2	4 of 4	0.62	Down
Mated spermatheca	63 ± 4	4 of 4	1.00	None
Adult carcass	43 ± 4	4 of 4	0.70	None
Larval CNS	367 ± 36	4 of 4	5.74	Up
Larval Salivary gland	65 ± 6	4 of 4	1.02	None
Larval midgut	156 ± 8	4 of 4	2.44	Up
Larval tubule	98 ± 7	4 of 4	1.50	Up
Larval hindgut	106 ± 11	4 of 4	1.66	Up
Larval fat body	37 ± 2	4 of 4	0.60	Down
Larval trachea	175 ± 17	4 of 4	2.73	Up
Larval carcass	50 ± 3	4 of 4	0.79	None
S2 cells (growing)	160 ± 8	4 of 4	2.50	Up
Whole fly	64 ± 7	4 of 4

Looking for FBgn0003392. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720