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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003392 through 18771 annotations produced 3 hits



shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786921-15798517 (+) // 99.64 //
Probeset : 1628859_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain900 324 of 414.10Up
Head252 224 of 4 3.90Up
Eye714 414 of 411.15Up
Thoracicoabdominal ganglion936 424 of 414.60Up
Salivary gland56 04 of 4 0.88None
Crop49 24 of 4 0.80None
Midgut75 34 of 4 1.20None
Tubule17 14 of 4 0.30Down
Hindgut43 24 of 4 0.70None
Heart140 84 of 4 2.20Up
Fat body47 14 of 4 0.75None
Ovary45 04 of 4 0.70None
Testis14 04 of 4 0.20Down
Male accessory glands51 44 of 4 0.80None
Virgin spermatheca39 24 of 4 0.62Down
Mated spermatheca63 44 of 4 1.00None
Adult carcass43 44 of 4 0.70None
Larval CNS367 364 of 4 5.74Up
Larval Salivary gland65 64 of 4 1.02None
Larval midgut156 84 of 4 2.44Up
Larval tubule98 74 of 4 1.50Up
Larval hindgut106 114 of 4 1.66Up
Larval fat body37 24 of 4 0.60Down
Larval trachea175 174 of 4 2.73Up
Larval carcass50 34 of 4 0.79None
S2 cells (growing)160 84 of 4 2.50Up
Whole fly64 74 of 4



shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786986-15800285 (+) // 100.0 //
Probeset : 1637637_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain709 164 of 4 6.40Up
Head175 224 of 4 1.60None
Eye225 134 of 4 2.02Up
Thoracicoabdominal ganglion619 154 of 4 5.50Up
Salivary gland112 64 of 4 1.01None
Crop95 64 of 4 0.90None
Midgut99 04 of 4 0.90None
Tubule94 24 of 4 0.80Down
Hindgut110 14 of 4 1.00None
Heart130 84 of 4 1.17None
Fat body62 134 of 4 0.56Down
Ovary96 34 of 4 0.90None
Testis383 154 of 4 3.40Up
Male accessory glands76 34 of 4 0.70None
Virgin spermatheca39 24 of 4 0.36Down
Mated spermatheca52 04 of 4 0.47Down
Adult carcass80 84 of 4 0.70None
Larval CNS230 444 of 4 2.07Up
Larval Salivary gland96 14 of 4 0.86None
Larval midgut171 24 of 4 1.54Up
Larval tubule150 54 of 4 1.40Up
Larval hindgut177 44 of 4 1.59Up
Larval fat body78 114 of 4 0.70None
Larval trachea157 74 of 4 1.41Up
Larval carcass181 134 of 4 1.63Up
S2 cells (growing)383 54 of 4 3.44Up
Whole fly111 124 of 4



shibere (shi):

Annotation Number : CG18102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003392
Gbrowse : chrX:15786261-15798000 (+) // 100.0 //
Probeset : 1625442_a_at
Accessions : protein= NP_001036278; /// NP_001036279; /// NP_001162766; /// NP_001162767; /// NP_001162768; /// NP_524853; /// NP_727910; /// NP_727911; /// NP_996465; /// NP_996466; /// NP_996467; /// NP_996468;, nucleotide= NM_001042813; /// NM_001042814; /// NM_001169295; /// NM_001169296; /// NM_001169297; /// NM_080114; /// NM_167470; /// NM_167471; /// NM_206742; /// NM_206743; /// NM_206744; /// NM_206745;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0048065 // male courtship behavior
FlyMine data for FBgn0003392.
Homophila reports that CG18102 is a close match (3e-19) to human gene NPG;NTG;OPA1 (NP_570850), a gene associated with Optic atrophy 1, 165500 (3);Optic atrophy and deafness, 125250 (3);{Glaucoma, normal tension, susceptibility to}, 606657 (3).
BioGrid reports that CG18102 interacts with CG4476 CG2210 CG1618 CG4264 CG11614 CG1945 CG8532 CG6571 CG40306 CG40306 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003392 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1045 254 of 411.40Up
Head311 134 of 4 3.40Up
Eye327 184 of 4 3.57Up
Thoracicoabdominal ganglion1233 354 of 413.50Up
Salivary gland52 73 of 4 0.58Down
Crop57 24 of 4 0.60Down
Midgut75 44 of 4 0.80None
Tubule70 24 of 4 0.80Down
Hindgut63 34 of 4 0.70Down
Heart65 44 of 4 0.72Down
Fat body31 42 of 4 0.34Down
Ovary80 24 of 4 0.90None
Testis91 64 of 4 1.00None
Male accessory glands28 33 of 4 0.30Down
Virgin spermatheca24 30 of 4 0.26Down
Mated spermatheca22 20 of 4 0.24Down
Adult carcass60 44 of 4 0.70Down
Larval CNS275 274 of 4 3.01Up
Larval Salivary gland49 44 of 4 0.54Down
Larval midgut109 34 of 4 1.20None
Larval tubule102 34 of 4 1.10None
Larval hindgut86 24 of 4 0.95None
Larval fat body38 23 of 4 0.40Down
Larval trachea70 84 of 4 0.77None
Larval carcass60 44 of 4 0.66Down
S2 cells (growing)307 64 of 4 3.36Up
Whole fly91 74 of 4

Looking for FBgn0003392. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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