FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003396 through 18771 annotations produced 3 hits

chr2R:20615461-20622912 (+) // 98.84 // /// chr2R:6524177-6554159 (+) // 98.01 // /// chr2R:266977-274378 (+) // 97.82 // /// chr2R:6517276-6524619 (+) // 97.18 // /// chr3L:925230-932599 (+) // 97.3 // /// chr3L:2966777-2974144 (+) // 97.41 // /// chr3R:23999446-24006819 (+) // 97.54 // /// chr3R:5663884-5671249 (+) // 97.14 // /// chrX:21567779-21575665 (+) // 98.48 // /// chr2R:10903016-10910383 (-) // 97.45 // /// chr2R:15802404-15809759 (-) // 97.41 // /// chr3RHet:1982292-1989645 (-) // 97.29 // /// chr3RHet:2047905-2055229 (-) // 96.72 // /// chr3L:19110197-19117587 (-) // 97.83 // /// chr3R:17586898-17594233 (-) // 97.15 // /// chr2L:4601758-4609142 (-) // 97.71 // (schnurri):

Annotation Number : X59545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625195_s_at
Accessions : protein= , nucleotide= NP_476723; /// NP_476724; /// NP_599106; /// NP_608403; /// NP_995813;
Pathway : 0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 00
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	196 ± 6	4 of 4	0.40	None
Head	240 ± 12	4 of 4	0.50	None
Eye	295 ± 27	4 of 4	0.67	None
Thoracicoabdominal ganglion	128 ± 13	4 of 4	0.30	None
Salivary gland	231 ± 13	4 of 4	0.52	None
Crop	434 ± 73	4 of 4	1.00	None
Midgut	47 ± 4	4 of 4	0.10	Down
Tubule	250 ± 37	4 of 4	0.60	Down
Hindgut	437 ± 18	4 of 4	1.00	None
Heart	4004 ± 416	4 of 4	9.09	Up
Fat body	4452 ± 727	4 of 4	10.10	Up
Ovary	9 ± 1	4 of 4	0.00	Down
Testis	31 ± 1	4 of 4	0.10	Down
Male accessory glands	159 ± 12	4 of 4	0.40	None
Virgin spermatheca	340 ± 38	4 of 4	0.77	None
Mated spermatheca	315 ± 52	4 of 4	0.72	None
Adult carcass	1406 ± 120	4 of 4	3.20	Up
Larval CNS	458 ± 76	4 of 4	1.04	None
Larval Salivary gland	124 ± 8	4 of 4	0.28	None
Larval midgut	36 ± 2	4 of 4	0.08	Down
Larval tubule	212 ± 11	4 of 4	0.50	None
Larval hindgut	377 ± 45	4 of 4	0.86	None
Larval fat body	69 ± 6	4 of 4	0.20	Down
Larval trachea	211 ± 25	4 of 4	0.48	None
Larval carcass	63 ± 7	4 of 4	0.14	Down
S2 cells (growing)	4035 ± 17	4 of 4	9.16	Up
Whole fly	440 ± 107	4 of 4

chr2R:7070728-7104918 (+) // 100.0 // (schnurri):

Annotation Number : CG7734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625445_s_at
Accessions : protein= , nucleotide= NP_476723; /// NP_476724; /// NP_599106; /// NP_995813;
Pathway : 0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 00
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for full length.
BioGrid reports that CG7734 interacts with CG9885 CG9885 CG4920 CG9653 CG9653 CG9653 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	248 ± 7	4 of 4	1.70	Up
Head	202 ± 6	4 of 4	1.40	Up
Eye	230 ± 13	4 of 4	1.57	Up
Thoracicoabdominal ganglion	228 ± 8	4 of 4	1.60	Up
Salivary gland	245 ± 22	4 of 4	1.68	Up
Crop	407 ± 21	4 of 4	2.80	Up
Midgut	253 ± 8	4 of 4	1.70	Up
Tubule	259 ± 34	4 of 4	1.80	Up
Hindgut	273 ± 12	4 of 4	1.90	Up
Heart	232 ± 27	4 of 4	1.59	None
Fat body	379 ± 38	4 of 4	2.60	Up
Ovary	197 ± 4	4 of 4	1.40	Up
Testis	39 ± 3	4 of 4	0.30	Down
Male accessory glands	215 ± 6	4 of 4	1.50	Up
Virgin spermatheca	246 ± 11	4 of 4	1.69	Up
Mated spermatheca	289 ± 18	4 of 4	1.98	Up
Adult carcass	223 ± 21	4 of 4	1.50	Up
Larval CNS	199 ± 23	4 of 4	1.36	Up
Larval Salivary gland	248 ± 25	4 of 4	1.70	Up
Larval midgut	336 ± 10	4 of 4	2.30	Up
Larval tubule	254 ± 16	4 of 4	1.70	Up
Larval hindgut	427 ± 38	4 of 4	2.93	Up
Larval fat body	171 ± 3	4 of 4	1.20	Up
Larval trachea	332 ± 22	4 of 4	2.28	Up
Larval carcass	234 ± 16	4 of 4	1.61	Up
S2 cells (growing)	461 ± 25	4 of 4	3.16	Up
Whole fly	146 ± 5	4 of 4

schnurri (shn):

Annotation Number : HDC05720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003396
Gbrowse : chr2R:7077155-7078309 (+) // 100.0 //
Probeset : 1628949_at
Accessions : protein= NP_476723; /// NP_476724; /// NP_599106; /// NP_995813;, nucleotide= NM_057375; /// NM_057376; /// NM_134279; /// NM_206091;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0003396.
TRiP has 1 RNAi stocks for FBgn0003396 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.70	None
Head	1 ± 1	0 of 4	2.30	None
Eye	2 ± 1	0 of 4	2.74	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	2.10	None
Salivary gland	6 ± 3	0 of 4	7.81	None
Crop	1 ± 0	0 of 4	2.30	None
Midgut	3 ± 1	0 of 4	4.80	None
Tubule	1 ± 0	0 of 4	1.50	None
Hindgut	0 ± 0	0 of 4	1.00	None
Heart	4 ± 1	0 of 4	6.32	None
Fat body	3 ± 2	0 of 4	4.10	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	2.10	None
Male accessory glands	6 ± 2	0 of 4	7.70	None
Virgin spermatheca	5 ± 1	0 of 4	6.71	None
Mated spermatheca	7 ± 0	0 of 4	9.00	Up
Adult carcass	4 ± 1	0 of 4	5.50	None
Larval CNS	1 ± 1	0 of 4	2.23	None
Larval Salivary gland	3 ± 1	0 of 4	4.90	None
Larval midgut	6 ± 1	0 of 4	8.42	Up
Larval tubule	6 ± 1	0 of 4	8.00	None
Larval hindgut	2 ± 1	1 of 4	3.48	None
Larval fat body	2 ± 2	0 of 4	3.60	None
Larval trachea	2 ± 1	0 of 4	3.10	None
Larval carcass	3 ± 0	0 of 4	4.23	None
S2 cells (growing)	2 ± 1	0 of 4	3.32	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0003396. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720