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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003411 through 18771 annotations produced 1 hits



chrX:11215611-11216379 (-) // 100.0 // (sisterless A):

Annotation Number : CG1641
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623391_at
Accessions : protein= , nucleotide= NP_511116;
Pathway : "0007492 // endoderm development // inferred from mutant phenotype /// 0007496 // anterior midgut development // inferre
Interpro : establishment of X:A ratio // non-traceable author statement /// 0007540 // sex determination
FlyMine data for full length.
BioGrid reports that CG1641 interacts with CG2174 CG2849 CG31999 CG3610 CG4071 CG4755 CG5771 CG6576 CG7238 CG8704 CG5993 CG3827 Dmel CG18350 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30None
Head2 10 of 4 0.30None
Eye3 10 of 4 0.42None
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland14 11 of 4 2.02Up
Crop4 20 of 4 0.70None
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.30Down
Hindgut1 00 of 4 0.30None
Heart4 10 of 4 0.55None
Fat body3 30 of 4 0.52None
Ovary5 21 of 4 0.80None
Testis18 54 of 4 2.60None
Male accessory glands3 20 of 4 0.50None
Virgin spermatheca3 20 of 4 0.46None
Mated spermatheca3 10 of 4 0.48None
Adult carcass2 00 of 4 0.40None
Larval CNS3 10 of 4 0.47None
Larval Salivary gland3 00 of 4 0.43None
Larval midgut1 00 of 4 0.15Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.33None
Larval fat body38 103 of 4 5.30None
Larval trachea2 21 of 4 0.36None
Larval carcass1 00 of 4 0.16Down
S2 cells (growing)1 00 of 4 0.27None
Whole fly7 10 of 4

Looking for FBgn0003411. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime