FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003411 through 18771 annotations produced 1 hits

chrX:11215611-11216379 (-) // 100.0 // (sisterless A):

Annotation Number : CG1641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623391_at
Accessions : protein= , nucleotide= NP_511116;
Pathway : "0007492 // endoderm development // inferred from mutant phenotype /// 0007496 // anterior midgut development // inferre
Interpro : establishment of X:A ratio // non-traceable author statement /// 0007540 // sex determination
FlyMine data for full length.
BioGrid reports that CG1641 interacts with CG2174 CG2849 CG31999 CG3610 CG4071 CG4755 CG5771 CG6576 CG7238 CG8704 CG5993 CG3827 Dmel CG18350 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.30	None
Head	2 ± 1	0 of 4	0.30	None
Eye	3 ± 1	0 of 4	0.42	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	14 ± 1	1 of 4	2.02	Up
Crop	4 ± 2	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	1 ± 0	0 of 4	0.30	None
Heart	4 ± 1	0 of 4	0.55	None
Fat body	3 ± 3	0 of 4	0.52	None
Ovary	5 ± 2	1 of 4	0.80	None
Testis	18 ± 5	4 of 4	2.60	None
Male accessory glands	3 ± 2	0 of 4	0.50	None
Virgin spermatheca	3 ± 2	0 of 4	0.46	None
Mated spermatheca	3 ± 1	0 of 4	0.48	None
Adult carcass	2 ± 0	0 of 4	0.40	None
Larval CNS	3 ± 1	0 of 4	0.47	None
Larval Salivary gland	3 ± 0	0 of 4	0.43	None
Larval midgut	1 ± 0	0 of 4	0.15	Down
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	2 ± 0	0 of 4	0.33	None
Larval fat body	38 ± 10	3 of 4	5.30	None
Larval trachea	2 ± 2	1 of 4	0.36	None
Larval carcass	1 ± 0	0 of 4	0.16	Down
S2 cells (growing)	1 ± 0	0 of 4	0.27	None
Whole fly	7 ± 1	0 of 4

Looking for FBgn0003411. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720