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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003415 through 18771 annotations produced 2 hits



blind spot (skd):

Annotation Number : CG9936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003415
Gbrowse : chr3L:20988031-20992180 (-) // 100.0 //
Probeset : 1630269_s_at
Accessions : protein= NP_524653; /// NP_730590; /// NP_730591;, nucleotide= NM_079914; /// NM_168879; /// NM_168880;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00165
Interpro : 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0005515 // protein binding // inferr
FlyMine data for FBgn0003415.
Homophila reports that CG9936 is a close match (1e-98) to human gene THRAP2;PROSIT240;TRAP240L;KIAA1025 (NP_056150), a gene associated with Transposition of the great arteries, dextro-looped 1, 608808 (3).
BioGrid reports that CG9936 interacts with CG6502 CG32443 CG9375 CG1030 CG1030 CG18085 CG3938 CG1030 CG1030 CG31481 CG31481 CG7958 .
TRiP has 1 RNAi stocks for FBgn0003415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 64 of 4 0.60Down
Head18 ± 04 of 4 0.30Down
Eye18 ± 04 of 4 0.25Down
Thoracicoabdominal ganglion21 ± 24 of 4 0.30Down
Salivary gland26 ± 24 of 4 0.36Down
Crop28 ± 34 of 4 0.40Down
Midgut14 ± 14 of 4 0.20Down
Tubule25 ± 14 of 4 0.30Down
Hindgut25 ± 34 of 4 0.30Down
Heart13 ± 14 of 4 0.19Down
Fat body31 ± 54 of 4 0.43Down
Ovary309 ± 74 of 4 4.20Up
Testis44 ± 34 of 4 0.60Down
Male accessory glands17 ± 04 of 4 0.20Down
Virgin spermatheca16 ± 24 of 4 0.22Down
Mated spermatheca17 ± 24 of 4 0.24Down
Adult carcass24 ± 13 of 4 0.30Down
Larval CNS66 ± 114 of 4 0.90None
Larval Salivary gland30 ± 34 of 4 0.42Down
Larval midgut18 ± 04 of 4 0.26Down
Larval tubule24 ± 24 of 4 0.30Down
Larval hindgut30 ± 14 of 4 0.41Down
Larval fat body26 ± 24 of 4 0.40Down
Larval trachea23 ± 54 of 4 0.32Down
Larval carcass25 ± 14 of 4 0.35Down
S2 cells (growing)74 ± 34 of 4 1.01None
Whole fly73 ± 44 of 4



blind spot (skd):

Annotation Number : CG9936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003415
Gbrowse : chr3L:20987227-21020524 (-) // 100.0 //
Probeset : 1631516_s_at
Accessions : protein= NP_524653; /// NP_730590; /// NP_730591;, nucleotide= NM_079914; /// NM_168879; /// NM_168880;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00165
Interpro : 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0005515 // protein binding // inferr
FlyMine data for FBgn0003415.
Homophila reports that CG9936 is a close match (1e-98) to human gene THRAP2;PROSIT240;TRAP240L;KIAA1025 (NP_056150), a gene associated with Transposition of the great arteries, dextro-looped 1, 608808 (3).
BioGrid reports that CG9936 interacts with CG6502 CG32443 CG9375 CG1030 CG1030 CG18085 CG3938 CG1030 CG1030 CG31481 CG31481 CG7958 .
TRiP has 1 RNAi stocks for FBgn0003415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 ± 114 of 4 2.00Up
Head55 ± 54 of 4 1.00None
Eye35 ± 14 of 4 0.63Down
Thoracicoabdominal ganglion61 ± 54 of 4 1.10None
Salivary gland78 ± 74 of 4 1.38Up
Crop95 ± 34 of 4 1.70Up
Midgut35 ± 24 of 4 0.60Down
Tubule31 ± 24 of 4 0.60Down
Hindgut72 ± 24 of 4 1.30Up
Heart29 ± 24 of 4 0.51Down
Fat body93 ± 64 of 4 1.66Up
Ovary229 ± 44 of 4 4.10Up
Testis12 ± 04 of 4 0.20Down
Male accessory glands50 ± 24 of 4 0.90None
Virgin spermatheca61 ± 54 of 4 1.09None
Mated spermatheca50 ± 54 of 4 0.88None
Adult carcass47 ± 34 of 4 0.80None
Larval CNS224 ± 334 of 4 3.96Up
Larval Salivary gland119 ± 84 of 4 2.11Up
Larval midgut52 ± 74 of 4 0.92None
Larval tubule65 ± 34 of 4 1.20None
Larval hindgut83 ± 24 of 4 1.47Up
Larval fat body44 ± 54 of 4 0.80None
Larval trachea69 ± 44 of 4 1.23Up
Larval carcass101 ± 34 of 4 1.79Up
S2 cells (growing)151 ± 74 of 4 2.67Up
Whole fly56 ± 34 of 4

Looking for FBgn0003415. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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