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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003429 through 18771 annotations produced 1 hits



chr3R:20490085-20533786 (+) // 100.0 // (slowpoke):

Annotation Number : CG10693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637301_a_at
Accessions : protein= , nucleotide= NP_001014651; /// NP_001014652; /// NP_001014653; /// NP_001014654; /// NP_001014655; /// NP_001014656; /// NP_001014657; /// NP_001014658; /// NP_001014659; /// NP_001014660; /// NP_001014661; /// NP_001014662; /// NP_001014663; /// NP_001014664; /// NP_001163712; /// NP_524486; /// NP_733029; /// NP_996289;
Pathway : "0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic an
Interpro : veined wing generated song production // inferred from mutant phenotype /// 0045433 // male courtship behavior
FlyMine data for full length.
Homophila reports that CG10693 is a close match (0) to human gene KCNMA1;SLO (NP_002238), a gene associated with Generalized epilepsy and paroxysmal dyskinesia, 609446 (3).
BioGrid reports that CG10693 interacts with CG1783 CG1783 CG6772 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 44 of 4 3.00Up
Head98 94 of 4 3.00Up
Eye73 74 of 4 2.24Up
Thoracicoabdominal ganglion53 114 of 4 1.60None
Salivary gland10 30 of 4 0.31Down
Crop41 14 of 4 1.30None
Midgut64 44 of 4 1.90Up
Tubule5 00 of 4 0.20Down
Hindgut15 10 of 4 0.50Down
Heart32 24 of 4 0.98None
Fat body22 23 of 4 0.69None
Ovary2 00 of 4 0.10Down
Testis11 02 of 4 0.40Down
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca23 23 of 4 0.71None
Mated spermatheca24 13 of 4 0.74None
Adult carcass121 44 of 4 3.70Up
Larval CNS10 10 of 4 0.33Down
Larval Salivary gland4 10 of 4 0.12Down
Larval midgut190 114 of 4 5.80Up
Larval tubule2 10 of 4 0.10Down
Larval hindgut10 30 of 4 0.31Down
Larval fat body7 20 of 4 0.20Down
Larval trachea8 80 of 4 0.26Down
Larval carcass61 74 of 4 1.88Up
S2 cells (growing)3 10 of 4 0.12Down
Whole fly32 54 of 4

Looking for FBgn0003429. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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