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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003435 through 18771 annotations produced 1 hits



smooth (sm):

Annotation Number : CG9218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003435
Gbrowse : chr2R:15417377-15519007 (-) // 100.0 //
Probeset : 1623699_a_at
Accessions : protein= NP_001027439; /// NP_001027440; /// NP_001036561; /// NP_476731; /// NP_725914; /// NP_725915;, nucleotide= NM_001032268; /// NM_001032269; /// NM_001043096; /// NM_057383; /// NM_166369; /// NM_166370;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // non-traceable auth
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0003435.
BDGP gene expression has embryonic in situ data for sm: 13 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0003435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain747 ± 614 of 4 1.50None
Head90 ± 164 of 4 0.20Down
Eye210 ± 454 of 4 0.43Down
Thoracicoabdominal ganglion254 ± 294 of 4 0.50Down
Salivary gland85 ± 104 of 4 0.17Down
Crop46 ± 84 of 4 0.10Down
Midgut30 ± 14 of 4 0.10Down
Tubule26 ± 24 of 4 0.10Down
Hindgut32 ± 14 of 4 0.10Down
Heart125 ± 204 of 4 0.26Down
Fat body60 ± 74 of 4 0.12Down
Ovary40 ± 34 of 4 0.10Down
Testis3456 ± 2084 of 4 7.10Up
Male accessory glands319 ± 224 of 4 0.70Down
Virgin spermatheca31 ± 24 of 4 0.07Down
Mated spermatheca40 ± 84 of 4 0.08Down
Adult carcass52 ± 94 of 4 0.10Down
Larval CNS187 ± 124 of 4 0.39Down
Larval Salivary gland371 ± 254 of 4 0.76None
Larval midgut22 ± 14 of 4 0.05Down
Larval tubule128 ± 114 of 4 0.30Down
Larval hindgut18 ± 24 of 4 0.04Down
Larval fat body871 ± 4204 of 4 1.80None
Larval trachea35 ± 324 of 4 0.07Down
Larval carcass14 ± 14 of 4 0.03Down
S2 cells (growing)8 ± 14 of 4 0.02Down
Whole fly487 ± 464 of 4

Looking for FBgn0003435. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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