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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003447 through 18771 annotations produced 1 hits



fascin (sn):

Annotation Number : CG32858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003447
Gbrowse : chrX:7858056-7880118 (+) // 99.32 //
Probeset : 1622932_s_at
Accessions : protein= NP_001162696; /// NP_001162697; /// NP_001162698; /// NP_511076; /// NP_727226; /// NP_727227;, nucleotide= NM_001169225; /// NM_001169226; /// NM_001169227; /// NM_078521; /// NM_167142; /// NM_167143;
Pathway : 0015629 // actin cytoskeleton // inferred from direct assay /// 0031941 // filamentous actin // inferred from direct ass
Interpro : "0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fr
FlyMine data for FBgn0003447.
BDGP gene expression has embryonic in situ data for sn: 69 pix of staining in 28 body parts.
Homophila reports that CG32858 is a close match (5e-90) to human gene FSCN2;RFSN (NP_001070650), a gene associated with Retinitis pigmentosa-30, 607921 (3).
BioGrid reports that CG32858 interacts with CG6433 CG6433 CG18412 CG3757 .
VDRC has 2 RNAi stocks for FBgn0003447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 84 of 4 0.80None
Head334 ± 184 of 4 1.90Up
Eye1488 ± 974 of 4 8.28Up
Thoracicoabdominal ganglion127 ± 54 of 4 0.70None
Salivary gland13 ± 31 of 4 0.07Down
Crop14 ± 13 of 4 0.10Down
Midgut28 ± 14 of 4 0.20Down
Tubule12 ± 22 of 4 0.10Down
Hindgut16 ± 04 of 4 0.10Down
Heart11 ± 23 of 4 0.06Down
Fat body21 ± 74 of 4 0.12Down
Ovary343 ± 94 of 4 1.90Up
Testis71 ± 44 of 4 0.40Down
Male accessory glands13 ± 20 of 4 0.10Down
Virgin spermatheca11 ± 01 of 4 0.06Down
Mated spermatheca17 ± 33 of 4 0.09Down
Adult carcass17 ± 31 of 4 0.10Down
Larval CNS733 ± 914 of 4 4.08Up
Larval Salivary gland12 ± 02 of 4 0.07Down
Larval midgut65 ± 24 of 4 0.36Down
Larval tubule66 ± 134 of 4 0.40Down
Larval hindgut30 ± 14 of 4 0.17Down
Larval fat body57 ± 84 of 4 0.30Down
Larval trachea983 ± 1424 of 4 5.47Up
Larval carcass130 ± 234 of 4 0.73None
S2 cells (growing)15 ± 13 of 4 0.09Down
Whole fly179 ± 184 of 4

Looking for FBgn0003447. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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