FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003460 through 18771 annotations produced 1 hits

medusa (so):

Annotation Number : CG11121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003460
Gbrowse : chr2R:3306848-3322377 (+) // 100.0 //
Probeset : 1641675_at
Accessions : protein= NP_476733;, nucleotide= NM_057385;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003460.
BDGP gene expression has embryonic in situ data for so: 35 pix of staining in 13 body parts.
Homophila reports that CG11121 is a close match (4e-54) to human gene BOR2;DMAHP;SIX5 (NP_787071), a gene associated with Branchiootorenal syndrome 2, 610896 (3).
BioGrid reports that CG11121 interacts with CG2934 CG5033 CG8384 CG8991 CG9554 CG1135 CG1218 CG15224 CG15459 CG17265 CG33090 CG3421 CG4807 CG5466 CG6688 CG7878 CG7937 CG9012 CG9083 CG9635 CG9554 CG9554 CG9554 CG9554 CG9554 CG9554 CG9554 CG9554 CG9554 CG9554 CG9885 CG9885 CG9885 CG9885 CG1464 CG1464 CG9554 CG9554 CG6963 CG4637 CG4637 CG1374 .
TRiP has 2 RNAi stocks for FBgn0003460 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003460 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	1 of 4	0.50	Down
Head	52 ± 6	4 of 4	2.70	Up
Eye	159 ± 2	4 of 4	8.28	Up
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.20	Down
Salivary gland	9 ± 2	0 of 4	0.49	Down
Crop	58 ± 1	4 of 4	3.00	Up
Midgut	10 ± 2	0 of 4	0.50	Down
Tubule	4 ± 1	0 of 4	0.20	Down
Hindgut	21 ± 1	4 of 4	1.10	None
Heart	41 ± 2	4 of 4	2.14	Up
Fat body	4 ± 3	0 of 4	0.22	Down
Ovary	4 ± 0	0 of 4	0.30	Down
Testis	67 ± 2	4 of 4	3.50	Up
Male accessory glands	9 ± 2	0 of 4	0.50	Down
Virgin spermatheca	6 ± 2	0 of 4	0.34	Down
Mated spermatheca	6 ± 1	1 of 4	0.35	Down
Adult carcass	30 ± 0	3 of 4	1.60	Up
Larval CNS	32 ± 3	4 of 4	1.69	Up
Larval Salivary gland	3 ± 1	0 of 4	0.20	Down
Larval midgut	11 ± 2	0 of 4	0.61	Down
Larval tubule	2 ± 1	0 of 4	0.10	Down
Larval hindgut	26 ± 1	4 of 4	1.36	Up
Larval fat body	7 ± 1	0 of 4	0.40	Down
Larval trachea	7 ± 5	1 of 4	0.36	Down
Larval carcass	56 ± 3	4 of 4	2.92	Up
S2 cells (growing)	2 ± 1	0 of 4	0.12	Down
Whole fly	19 ± 1	4 of 4

Looking for FBgn0003460. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720