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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003475 through 18771 annotations produced 3 hits



spire (spir):

Annotation Number : CG10076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003475
Gbrowse : chr2L:20311218-20348395 (+) // 100.0 //
Probeset : 1635630_a_at
Accessions : protein= NP_001163020; /// NP_524854; /// NP_724254; /// NP_724255; /// NP_724256;, nucleotide= NM_001169549; /// NM_080115; /// NM_165323; /// NM_165324; /// NM_165325;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // traceable author statement //
FlyMine data for FBgn0003475.
BDGP gene expression has embryonic in situ data for spir: 38 pix of staining in 20 body parts.
BioGrid reports that CG10076 interacts with CG14579 CG1891 CG5680 CG15119 CG30409 CG31092 CG8280 CG9603 CG9924 CG11924 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain503 214 of 4 4.80Up
Head194 134 of 4 1.80Up
Eye440 344 of 4 4.19Up
Thoracicoabdominal ganglion504 34 of 4 4.80Up
Salivary gland9 00 of 4 0.09Down
Crop10 11 of 4 0.10Down
Midgut108 54 of 4 1.00None
Tubule61 44 of 4 0.60Down
Hindgut53 24 of 4 0.50Down
Heart27 54 of 4 0.27Down
Fat body31 34 of 4 0.30Down
Ovary291 44 of 4 2.80Up
Testis19 14 of 4 0.20Down
Male accessory glands8 10 of 4 0.10Down
Virgin spermatheca66 44 of 4 0.63Down
Mated spermatheca43 34 of 4 0.41Down
Adult carcass32 44 of 4 0.30Down
Larval CNS166 144 of 4 1.58Up
Larval Salivary gland10 11 of 4 0.10Down
Larval midgut83 24 of 4 0.79None
Larval tubule61 54 of 4 0.60Down
Larval hindgut48 24 of 4 0.46Down
Larval fat body23 34 of 4 0.20Down
Larval trachea33 74 of 4 0.32Down
Larval carcass19 14 of 4 0.19Down
S2 cells (growing)137 124 of 4 1.30None
Whole fly105 84 of 4



spire (spir):

Annotation Number : CG10076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003475
Gbrowse : chr2L:20311236-20344970 (+) // 100.0 //
Probeset : 1637962_at
Accessions : protein= NP_001163020; /// NP_524854; /// NP_724254; /// NP_724255; /// NP_724256;, nucleotide= NM_001169549; /// NM_080115; /// NM_165323; /// NM_165324; /// NM_165325;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // traceable author statement //
FlyMine data for FBgn0003475.
BDGP gene expression has embryonic in situ data for spir: 38 pix of staining in 20 body parts.
BioGrid reports that CG10076 interacts with CG14579 CG1891 CG5680 CG15119 CG30409 CG31092 CG8280 CG9603 CG9924 CG11924 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain347 64 of 4 6.00Up
Head159 84 of 4 2.80Up
Eye210 164 of 4 3.64Up
Thoracicoabdominal ganglion524 254 of 4 9.10Up
Salivary gland30 93 of 4 0.54None
Crop20 24 of 4 0.40Down
Midgut142 34 of 4 2.50Up
Tubule52 94 of 4 0.90None
Hindgut121 94 of 4 2.10Up
Heart78 114 of 4 1.35None
Fat body94 54 of 4 1.64Up
Ovary32 14 of 4 0.60Down
Testis55 14 of 4 1.00None
Male accessory glands12 13 of 4 0.20Down
Virgin spermatheca80 84 of 4 1.40None
Mated spermatheca80 74 of 4 1.40None
Adult carcass78 44 of 4 1.40Up
Larval CNS58 44 of 4 1.02None
Larval Salivary gland12 14 of 4 0.21Down
Larval midgut177 64 of 4 3.08Up
Larval tubule101 104 of 4 1.80Up
Larval hindgut88 84 of 4 1.53Up
Larval fat body47 54 of 4 0.80None
Larval trachea46 134 of 4 0.81None
Larval carcass20 34 of 4 0.36Down
S2 cells (growing)168 114 of 4 2.92Up
Whole fly57 24 of 4



spire (spir):

Annotation Number : CG10076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003475
Gbrowse : chr2L:20311236-20344970 (+) // 100.0 //
Probeset : 1631571_a_at
Accessions : protein= NP_001163020; /// NP_524854; /// NP_724254; /// NP_724255; /// NP_724256;, nucleotide= NM_001169549; /// NM_080115; /// NM_165323; /// NM_165324; /// NM_165325;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // traceable author statement //
FlyMine data for FBgn0003475.
BDGP gene expression has embryonic in situ data for spir: 38 pix of staining in 20 body parts.
BioGrid reports that CG10076 interacts with CG14579 CG1891 CG5680 CG15119 CG30409 CG31092 CG8280 CG9603 CG9924 CG11924 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 54 of 4 6.20Up
Head107 34 of 4 3.00Up
Eye153 54 of 4 4.34Up
Thoracicoabdominal ganglion269 104 of 4 7.60Up
Salivary gland15 30 of 4 0.43Down
Crop11 11 of 4 0.30Down
Midgut65 24 of 4 1.90Up
Tubule27 24 of 4 0.80Down
Hindgut60 44 of 4 1.70Up
Heart29 24 of 4 0.84None
Fat body35 34 of 4 1.00None
Ovary42 54 of 4 1.20None
Testis31 14 of 4 0.90None
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca22 24 of 4 0.63Down
Mated spermatheca22 14 of 4 0.62Down
Adult carcass36 34 of 4 1.00None
Larval CNS32 44 of 4 0.92None
Larval Salivary gland12 20 of 4 0.36Down
Larval midgut84 24 of 4 2.39Up
Larval tubule51 64 of 4 1.50None
Larval hindgut39 34 of 4 1.11None
Larval fat body26 52 of 4 0.70None
Larval trachea25 34 of 4 0.71Down
Larval carcass13 20 of 4 0.38Down
S2 cells (growing)120 64 of 4 3.42Up
Whole fly35 24 of 4

Looking for FBgn0003475. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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