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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003495 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:22890791-22895790 (-) // 100.0 //):

Annotation Number : CG6134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-92
Gbrowse :
Probeset : 1641068_a_at
Accessions : protein= , nucleotide=
Interpro : "0000578 // embryonic axis specification // non-traceable author statement /// 0006952 // defense response // inferred f
FlyMine data for chr3-92.
BioGrid reports that CG6134 interacts with CG7940 CG5848 CG5848 CG5848 CG5848 CG5848 CG5848 CG1857 CG10079 CG11992 CG5067 CG6868 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 34 of 4 0.60Down
Head237 54 of 4 1.60Up
Eye111 04 of 4 0.74Down
Thoracicoabdominal ganglion127 64 of 4 0.80None
Salivary gland502 204 of 4 3.34Up
Crop301 64 of 4 2.00Up
Midgut20 40 of 4 0.10Down
Tubule6 10 of 4 0.00Down
Hindgut110 64 of 4 0.70Down
Heart68 34 of 4 0.46Down
Fat body88 74 of 4 0.59Down
Ovary375 134 of 4 2.50Up
Testis29 24 of 4 0.20Down
Male accessory glands28 54 of 4 0.20Down
Virgin spermatheca115 84 of 4 0.77Down
Mated spermatheca90 34 of 4 0.60Down
Adult carcass213 24 of 4 1.40Up
Larval CNS96 104 of 4 0.64Down
Larval Salivary gland416 464 of 4 2.77Up
Larval midgut19 20 of 4 0.13Down
Larval tubule13 23 of 4 0.10Down
Larval hindgut119 54 of 4 0.79Down
Larval fat body112 144 of 4 0.70None
Larval trachea98 54 of 4 0.65Down
Larval carcass142 124 of 4 0.95None
S2 cells (growing)1556 124 of 410.35Up
Whole fly150 94 of 4

Looking for FBgn0003495. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime