FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003499 through 18771 annotations produced 1 hits

Stripe (sr):

Annotation Number : CG7847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003499
Gbrowse : chr3R:13916524-13959471 (+) // 100.0 //
Probeset : 1639223_a_at
Accessions : protein= NP_001163643; /// NP_524395; /// NP_732289;, nucleotide= NM_001170172; /// NM_079671; /// NM_169786;
Pathway : engulfment // inferred from mutant phenotype /// 0007390 // germ-band shortening // inferred from mutant phenotype ///
Interpro : open tracheal system // inferred from genetic interaction /// 0007427 // epithelial cell migration
FlyMine data for FBgn0003499.
Homophila reports that CG7847 is a close match (8e-11) to human gene GLIS3;ZNF515 (NP_001035878), a gene associated with Diabetes mellitus, neonatal, with congenital hypothyroidism, 610199 (3).
BioGrid reports that CG7847 interacts with CG8376 CG9375 CG18085 CG4608 .
TRiP has 1 RNAi stocks for FBgn0003499 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	124 ± 7	4 of 4	8.20	Up
Head	38 ± 5	4 of 4	2.50	Up
Eye	6 ± 1	2 of 4	0.46	Down
Thoracicoabdominal ganglion	81 ± 5	4 of 4	5.40	Up
Salivary gland	5 ± 1	0 of 4	0.33	Down
Crop	68 ± 13	4 of 4	4.50	Up
Midgut	6 ± 0	2 of 4	0.40	Down
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	16 ± 2	4 of 4	1.10	None
Heart	10 ± 1	4 of 4	0.67	Down
Fat body	11 ± 1	3 of 4	0.75	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.20	Down
Male accessory glands	3 ± 1	0 of 4	0.20	Down
Virgin spermatheca	9 ± 1	1 of 4	0.61	Down
Mated spermatheca	10 ± 0	2 of 4	0.67	Down
Adult carcass	26 ± 1	3 of 4	1.80	Up
Larval CNS	14 ± 2	4 of 4	0.96	None
Larval Salivary gland	3 ± 1	0 of 4	0.24	Down
Larval midgut	4 ± 1	0 of 4	0.30	Down
Larval tubule	3 ± 1	0 of 4	0.20	Down
Larval hindgut	13 ± 1	4 of 4	0.88	None
Larval fat body	1 ± 1	0 of 4	0.10	Down
Larval trachea	3 ± 1	0 of 4	0.22	Down
Larval carcass	99 ± 9	4 of 4	6.52	Up
S2 cells (growing)	4 ± 0	1 of 4	0.30	Down
Whole fly	15 ± 0	4 of 4

Looking for FBgn0003499. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720