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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003502 through 18771 annotations produced 1 hits



Btk family kinase at 29A (Btk29A):

Annotation Number : CG8049
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003502
Gbrowse : chr2L:8259503-8301072 (-) // 100.0 //
Probeset : 1636265_s_at
Accessions : protein= NP_001097120; /// NP_001097121; /// NP_476745; /// NP_476746; /// NP_723369; /// NP_723370;, nucleotide= NM_001103650; /// NM_001103651; /// NM_057397; /// NM_057398; /// NM_164804; /// NM_164805;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0045
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0003502.
BDGP gene expression has embryonic in situ data for Btk29A: 25 pix of staining in 42 body parts.
Homophila reports that CG8049 is a close match (1e-11) to human gene NPR2;ANPRB;AMDM (NP_003986), a gene associated with Acromesomelic dysplasia, Maroteaux type, 602875 (3).
BioGrid reports that CG8049 interacts with CG2275 CG9375 CG7524 CG7524 CG7873 CG7873 CG7761 CG1389 .
TRiP has 3 RNAi stocks for FBgn0003502 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003502 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 44 of 4 0.60Down
Head47 84 of 4 0.70None
Eye19 23 of 4 0.28Down
Thoracicoabdominal ganglion33 44 of 4 0.50Down
Salivary gland8 20 of 4 0.12Down
Crop19 23 of 4 0.30Down
Midgut22 14 of 4 0.30Down
Tubule50 153 of 4 0.70None
Hindgut42 14 of 4 0.60Down
Heart27 53 of 4 0.39Down
Fat body108 294 of 4 1.56None
Ovary182 134 of 4 2.60Up
Testis16 04 of 4 0.20Down
Male accessory glands86 54 of 4 1.20Up
Virgin spermatheca78 114 of 4 1.12None
Mated spermatheca99 144 of 4 1.42None
Adult carcass28 41 of 4 0.40Down
Larval CNS187 354 of 4 2.69Up
Larval Salivary gland16 13 of 4 0.23Down
Larval midgut16 23 of 4 0.23Down
Larval tubule45 24 of 4 0.70Down
Larval hindgut92 34 of 4 1.33Up
Larval fat body49 44 of 4 0.70Down
Larval trachea66 94 of 4 0.95None
Larval carcass68 64 of 4 0.98None
S2 cells (growing)22 14 of 4 0.32Down
Whole fly69 24 of 4

Looking for FBgn0003502. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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