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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003525 through 18771 annotations produced 1 hits

String (stg):

Annotation Number : CG1395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003525
Gbrowse : chr3R:25077539-25081502 (-) // 100.0 //
Probeset : 1633174_at
Accessions : protein= NP_524547;, nucleotide= NM_079823;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0003525.
BDGP gene expression has embryonic in situ data for stg: 66 pix of staining in 6 body parts.
BioGrid reports that CG1395 interacts with CG32171 CG2652 CG7168 CG7172 CG9511 CG3166 CG11579 CG11579 CG2050 CG2050 CG9045 CG9045 CG9045 CG3978 CG3978 CG17077 CG9375 CG9375 CG4336 CG4336 CG4336 CG3938 CG3936 CG10895 CG5408 CG1856 CG32417 .
TRiP has 3 RNAi stocks for FBgn0003525 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003525 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 13 of 4 0.00Down
Head13 24 of 4 0.00Down
Eye5 02 of 4 0.01Down
Thoracicoabdominal ganglion7 11 of 4 0.00Down
Salivary gland13 30 of 4 0.02Down
Crop11 24 of 4 0.00Down
Midgut6 03 of 4 0.00Down
Tubule9 50 of 4 0.00Down
Hindgut7 14 of 4 0.00Down
Heart25 34 of 4 0.04Down
Fat body27 124 of 4 0.04Down
Ovary1774 364 of 4 2.90Up
Testis5 03 of 4 0.00Down
Male accessory glands18 33 of 4 0.00Down
Virgin spermatheca18 23 of 4 0.03Down
Mated spermatheca17 32 of 4 0.03Down
Adult carcass30 43 of 4 0.00Down
Larval CNS852 684 of 4 1.37Up
Larval Salivary gland16 04 of 4 0.03Down
Larval midgut33 54 of 4 0.05Down
Larval tubule10 13 of 4 0.00Down
Larval hindgut47 44 of 4 0.08Down
Larval fat body27 24 of 4 0.00Down
Larval trachea284 384 of 4 0.46Down
Larval carcass108 34 of 4 0.17Down
S2 cells (growing)947 294 of 4 1.53Up
Whole fly621 274 of 4

Looking for FBgn0003525. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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