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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003557 through 18771 annotations produced 1 hits

Suppressor of deltex (Su(dx)):

Annotation Number : CG4244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003557
Gbrowse : chr2L:2041271-2044367 (+) // 100.0 //
Probeset : 1636302_s_at
Accessions : protein= NP_476753; /// NP_722753; /// NP_722754;, nucleotide= NM_057405; /// NM_164448; /// NM_164449;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0003557.
Homophila reports that CG4244 is a close match (4e-13) to human gene KIAA0869;KIBRA;WWC1 (NP_056053), a gene associated with [Memory, enhanced, association with] (3).
BioGrid reports that CG4244 interacts with CG5146 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3929 CG3929 CG3929 CG5460 CG14548 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3929 .
TRiP has 1 RNAi stocks for FBgn0003557 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003557 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 124 of 4 3.10Up
Head188 94 of 4 1.90Up
Eye168 64 of 4 1.73Up
Thoracicoabdominal ganglion303 214 of 4 3.10Up
Salivary gland157 64 of 4 1.61Up
Crop138 54 of 4 1.40Up
Midgut359 44 of 4 3.70Up
Tubule383 234 of 4 3.90Up
Hindgut213 74 of 4 2.20Up
Heart163 34 of 4 1.67Up
Fat body136 274 of 4 1.40None
Ovary102 14 of 4 1.10None
Testis28 34 of 4 0.30Down
Male accessory glands176 104 of 4 1.80Up
Virgin spermatheca143 64 of 4 1.46Up
Mated spermatheca126 134 of 4 1.30None
Adult carcass135 144 of 4 1.40None
Larval CNS169 154 of 4 1.73Up
Larval Salivary gland171 134 of 4 1.75Up
Larval midgut559 434 of 4 5.72Up
Larval tubule182 84 of 4 1.90Up
Larval hindgut223 64 of 4 2.28Up
Larval fat body89 124 of 4 0.90None
Larval trachea129 134 of 4 1.32Up
Larval carcass96 84 of 4 0.98None
S2 cells (growing)374 114 of 4 3.83Up
Whole fly97 64 of 4

Looking for FBgn0003557. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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